View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14320_low_1 (Length: 838)

Name: NF14320_low_1
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14320_low_1
NF14320_low_1
[»] chr4 (3 HSPs)
chr4 (578-821)||(25737183-25737426)
chr4 (12-59)||(25735568-25735615)
chr4 (542-630)||(38656558-38656643)
[»] chr1 (4 HSPs)
chr1 (171-226)||(45691579-45691634)
chr1 (177-220)||(28165109-28165152)
chr1 (180-226)||(51120694-51120740)
chr1 (174-223)||(36437180-36437229)
[»] chr7 (1 HSPs)
chr7 (173-223)||(46101155-46101205)
[»] chr2 (2 HSPs)
chr2 (171-226)||(13027917-13027972)
chr2 (735-784)||(37081799-37081848)
[»] chr8 (1 HSPs)
chr8 (185-227)||(30105596-30105638)
[»] chr6 (4 HSPs)
chr6 (169-223)||(2950135-2950189)
chr6 (185-223)||(5428831-5428869)
chr6 (185-223)||(24789915-24789953)
chr6 (174-223)||(606598-606647)
[»] scaffold1809 (1 HSPs)
scaffold1809 (174-223)||(478-527)
[»] chr5 (1 HSPs)
chr5 (174-223)||(3629190-3629239)
[»] chr3 (1 HSPs)
chr3 (174-223)||(46918444-46918493)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 578 - 821
Target Start/End: Original strand, 25737183 - 25737426
Alignment:
Q  578 ttggagtctttatcttctcatttgagaacattctagaggttttagagtgagttgttcatggtatggagaaggctttgtaattttgatttgattcattcta 677  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  25737183 ttggagtctttatcttctcatttgagaatattctagaggttttagagtgagttgttcatggtttgaagaaggctttgtaattttgatttgattcattcta 25737282  T
Q  678 attcacnnnnnnncttaatagacaaggtcataggtgttttgaatctcgtatgctactaatcatgtaattggaaaaagacagacacctcatagaagttatg 777  Q
    ||||||       |||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  25737283 attcactttttttcttaatagacaaggtcatgggtgttttgaatctctgatgctacaaatcatgtaattgggaaaagacagacacctcatagaagttatg 25737382  T
Q  778 gaagctaaagagtcatctatgattgatgctaacttgagataagt 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25737383 gaagctaaagagtcatctatgattgatgctaacttgagataagt 25737426  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 25735568 - 25735615
Alignment:
Q  12 ccaataatatgcacgacttcatggaactgcagaaaatttccactacgt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25735568 ccaataatatgcacgacttcatggaactgcagaaaatttccactacgt 25735615  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 630
Target Start/End: Original strand, 38656558 - 38656643
Alignment:
Q  542 gatgacttctaattgtatgatatttttagctaagttttggagtctttatcttctcatttgagaacattctagaggttttagagtgagtt 630  Q
    |||||||||| || |||||||||||||  ||| ||| | |||||||  |||| ||||| |||||| |||||||| ||||||||||||||    
T  38656558 gatgacttctcatcgtatgatattttt--ctatgttatcgagtcttg-tcttgtcattggagaactttctagagattttagagtgagtt 38656643  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 45691634 - 45691579
Alignment:
Q  171 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 226  Q
    ||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||    
T  45691634 aatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataat 45691579  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 28165152 - 28165109
Alignment:
Q  177 tataaggctatatttgtaaaaatagtcaaaaaattacaacaatt 220  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||    
T  28165152 tataagggtatatttgtaaaaatattcaaaaaattacaataatt 28165109  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 51120740 - 51120694
Alignment:
Q  180 aaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 226  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||||    
T  51120740 aaggttatatttgtaaaaatatttaaagaattacaacaattaataat 51120694  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 36437229 - 36437180
Alignment:
Q  174 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  36437229 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 36437180  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 46101205 - 46101155
Alignment:
Q  173 tttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    ||||||||||| |||||||||||||||| | |||||| |||||||||||||    
T  46101205 tttctataagggtatatttgtaaaaatatttaaaaaactacaacaattaat 46101155  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 13027917 - 13027972
Alignment:
Q  171 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 226  Q
    ||||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||    
T  13027917 aatttctatgaggatatatttgtaaaaatattcaaaaagttgcaacaatgaataat 13027972  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 784
Target Start/End: Original strand, 37081799 - 37081848
Alignment:
Q  735 aatcatgtaattggaaaaagacagacacctcatagaagttatggaagcta 784  Q
    |||||||||||| || ||||  ||||||||||| ||||||||||||||||    
T  37081799 aatcatgtaattcgacaaagcaagacacctcatggaagttatggaagcta 37081848  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 30105638 - 30105596
Alignment:
Q  185 tatatttgtaaaaatagtcaaaaaattacaacaattaataata 227  Q
    |||||||||||||||  | ||||||||||||||||||||||||    
T  30105638 tatatttgtaaaaatgtttaaaaaattacaacaattaataata 30105596  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 2950189 - 2950135
Alignment:
Q  169 acaatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    ||||||| ||| ||| |||||||||||||||| |||||||||||||  |||||||    
T  2950189 acaatttttatcaggatatatttgtaaaaatattcaaaaaattacattaattaat 2950135  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 5428831 - 5428869
Alignment:
Q  185 tatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  5428831 tatatttgtaaaaatatttaaaaaattacaacaattaat 5428869  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 24789953 - 24789915
Alignment:
Q  185 tatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  24789953 tatatttgtaaaaatatttaaaaaattacaacaattaat 24789915  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 606647 - 606598
Alignment:
Q  174 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  606647 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 606598  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 527 - 478
Alignment:
Q  174 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  527 ttctataagggtatatttgtaaaaatctttaaaaagttacaacaattaat 478  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 3629239 - 3629190
Alignment:
Q  174 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  3629239 ttctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaat 3629190  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46918493 - 46918444
Alignment:
Q  174 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 223  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  46918493 ttctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaat 46918444  T

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