View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_low_10 (Length: 314)
Name: NF14320_low_10
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 55017215 - 55017528
Alignment:
| Q |
1 |
ttccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttcctagatcaatttaagttgttacactt |
100 |
Q |
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| T |
55017215 |
ttccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttcctagatcaatttaagttgttacactt |
55017314 |
T |
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| Q |
101 |
acaaatactttatcatttacatggtattattttcttttgcatactacaatgctagtaatttgttaactaaattaagagtatttagtactccataagactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55017315 |
acaaatactttatcatttacatggtattattttcttttgcatattgcaatgctagtaatttgttaactaaattaagagtatttagtactccataagactg |
55017414 |
T |
|
| Q |
201 |
gtaattcaggggtttgttcattgtttatttttcattttggtggtgattaatattgctggtttaaatgtataatactagtatcaaattattaatttttgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55017415 |
gtaattcaggggtttgttcattgtttatttttctttttggtggtgattaatattgctggtttaaatgtataatactagtatcaaattattaatttttgtt |
55017514 |
T |
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| Q |
301 |
tatgtaacaagatt |
314 |
Q |
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|||||||||||||| |
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| T |
55017515 |
tatgtaacaagatt |
55017528 |
T |
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