View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14320_low_14 (Length: 252)
Name: NF14320_low_14
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 40914488 - 40914254
Alignment:
| Q |
12 |
aagaaagaatggagtaaaataatttattagaaggaaaatgaatatatcagtatcaatatatatatcatacaaaaacatgtcaatatggtagccattctgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40914488 |
aagaaagaatggagtaaaataatttattagaaggaaaatgaatatatcagtatcaatatatatatcatacaaaaacatgtcaatatggtagccattctgt |
40914389 |
T |
|
| Q |
112 |
acattaaattacaagcacaacaacagcatttgatattcggccaacaaatgccaacataaactgacaggtgaatctctacaaacacgcctctcttccagcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40914388 |
acattaaattacaagcacaacaacagcatttgatattcggccaacaaatgccaacataaactgacaggtgaatctttacaaacacgcctctcttccagcc |
40914289 |
T |
|
| Q |
212 |
tgtgcaaaagaatgcttctaggcatgcacaagtat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40914288 |
tgtgcaaaagaatgcttctaggcatgcacaagtat |
40914254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University