View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_low_19 (Length: 227)
Name: NF14320_low_19
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 835367 - 835143
Alignment:
| Q |
1 |
ccagtagatgtaagaattacaaattcattccatgtattagtgattgagaggagcaatatattactaatagtactatttgtta----------------tg |
84 |
Q |
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| T |
835367 |
ccagtagatgtaagaattacaaattcattccatgtattagtgattgagaggagcaatatattactaacagtactatttgttagaaaagactttaggtatg |
835268 |
T |
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| Q |
85 |
ctaggtatcaataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaaaaagaactcatatatccagaatcaaccaa |
184 |
Q |
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| T |
835267 |
ctaggtatcaataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaaaaagaactcatatatccagaatcaaccaa |
835168 |
T |
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| Q |
185 |
tttgaaattatggcaagtcacaaaa |
209 |
Q |
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| T |
835167 |
tttgaaattatggcaagtcacaaaa |
835143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 813547 - 813443
Alignment:
| Q |
95 |
ataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaa-aaagaactcatatatccagaatcaaccaatttgaaatt |
193 |
Q |
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|||||||| ||||||||||||||||| ||||| | |||| |||||| ||| ||||||||| |||||| | || |||||||||||||||||||||||| | |
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| T |
813547 |
ataccaattattgtgcagaacattcctagagaggatctagtgtata--taacgttatgaaagaaagaagtgatgtatccagaatcaaccaatttgaaact |
813450 |
T |
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| Q |
194 |
atggcaa |
200 |
Q |
| |
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|| |||| |
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| T |
813449 |
attgcaa |
813443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 813628 - 813597
Alignment:
| Q |
4 |
gtagatgtaagaattacaaattcattccatgt |
35 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
813628 |
gtagatgtaagaattacaaattcattccatgt |
813597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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