View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_low_3 (Length: 524)
Name: NF14320_low_3
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 835874 - 835352
Alignment:
| Q |
1 |
taagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaataatattttagcttcgt |
100 |
Q |
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| T |
835874 |
taagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaatttctttcagatttgaaccaaataatattttagcttcgt |
835775 |
T |
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| Q |
101 |
tcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtc |
200 |
Q |
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| T |
835774 |
tcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatgtgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtc |
835675 |
T |
|
| Q |
201 |
aggaacacacgtcggaggaattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctcttcagttctacatata |
300 |
Q |
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| T |
835674 |
aggaacacacgtcggaggaattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctcttcagttctacatata |
835575 |
T |
|
| Q |
301 |
ccaggagggttgccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaactaa---aatgcacctta |
397 |
Q |
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| T |
835574 |
ccaggagggttaccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaact----actagagatgaaaactaaaataatgcacctta |
835479 |
T |
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| Q |
398 |
attacttaccactgcataattgtagcagcaaccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagtatgttctatctgtg |
497 |
Q |
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| T |
835478 |
attacttaccactgcataattgtagcagcagccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagtatgttctatctgtg |
835379 |
T |
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| Q |
498 |
aacaacaaaggccagtagatgtaagaa |
524 |
Q |
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| T |
835378 |
aacaacaaaggccagtagatgtaagaa |
835352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 814123 - 813616
Alignment:
| Q |
19 |
ggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaataatattttagcttcgttcaagaatgagacggaat |
118 |
Q |
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||||||||||| ||||| ||||| |||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
814123 |
ggcaaagaaatcgaagcgggaccaaaaaactctcctggacgaacagctttcaaatttgaaccaaataatattttagctttgttcaagaaagagacggaat |
814024 |
T |
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| Q |
119 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
814023 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
813924 |
T |
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| Q |
219 |
aattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctcttcagttctacatataccaggagggttgccatat |
318 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||| | || || |||||||||||||||||||||| ||||||||| ||||| |||| | |
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| T |
813923 |
aattattttccatctaaccatcctctttatcatttgcttgaacatgcgtggtaatggatcaacctcttcagttctacttataccaggggggttaccattt |
813824 |
T |
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| Q |
319 |
ttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaactaaaat---gcaccttaattacttaccactgcata |
415 |
Q |
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| T |
813823 |
ttgtcctgcaacattttacaaaaataattagtatcaattagtaactactaactagagatgaaaactgaaatcaacaaccttaattacttaccactgcata |
813724 |
T |
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| Q |
416 |
attgtagcagcaaccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagtatgttctatctgtgaacaacaaaggccagtag |
515 |
Q |
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| T |
813723 |
gttgtagcagcaaccaaattgtagggtttcacgtcctttacctcgcatccactttctaggttttgaatatgttctttctgtgaacaataaagg-cggtag |
813625 |
T |
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| Q |
516 |
atgtaagaa |
524 |
Q |
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||||||||| |
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| T |
813624 |
atgtaagaa |
813616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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