View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_low_4 (Length: 478)
Name: NF14320_low_4
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Original strand, 43090533 - 43090976
Alignment:
| Q |
15 |
tatactttctaacataaaattttcaatacactcccttctattagttaaatttcaaatgggtaaatccaatccaaattacgtaagtctcnnnnnnnttcac |
114 |
Q |
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| T |
43090533 |
tatactttctaacataaaattttcaatacactcccttttattagttaaatttcaaatgggtaaatccaa-----attacgtaagtctccaaaaatttcaa |
43090627 |
T |
|
| Q |
115 |
gaga-cttgtgcaaatttcaacaaactaaaagaagtgtgtcgagaagcaaatgttaaagagtgtgttgctacaatttcgcgacatagttgtaagatgtag |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43090628 |
gagaacttgtgcaaatttcaacaaactaaaagaagtgtgttgagaagcgaatgttaaagagtgtgttgctacaatttcgcgacataattgtaagatgtag |
43090727 |
T |
|
| Q |
214 |
ttttgtcatttatatacatatgaaatatgatgtgtaaaatatacaagtacaagttaaatcgagccaaatttgttggcccaaacttgaataataccatgaa |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090728 |
ttttgtcatttatatacatatgaaatatgatgtttaaaatatacaagtacaagttaaatcgagccaaatttgttggcccaaacttgaataataccatgaa |
43090827 |
T |
|
| Q |
314 |
cttctttccgctaataatatactgttagttgactactaatgcacacaacgctaaactaattgtaacgagtgaatcaaatcaccatggtatttaaattttg |
413 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090828 |
cttctttccgctaataatatattgttagttgactactaatgcacacaacactaaactaattgtaacgagtgaatcaaatcaccatggtatttaaattttg |
43090927 |
T |
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| Q |
414 |
agtatgtcaaactttttaacttaggatataattccactaaggatttact |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090928 |
agtatgtcaaactttttaacttaggatataattccactaaggatttact |
43090976 |
T |
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