View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_low_6 (Length: 417)
Name: NF14320_low_6
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 43110373 - 43109992
Alignment:
| Q |
19 |
acaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggttgagaattttgccttaccatg |
118 |
Q |
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| T |
43110373 |
acaattctgaagcattttggtattagggaatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggttgagaattttgccttaccatg |
43110274 |
T |
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| Q |
119 |
atctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgaggagagaaattaattgaat |
218 |
Q |
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| T |
43110273 |
atctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgaggagagaaattaattgaat |
43110174 |
T |
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| Q |
219 |
acataatttcccaataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgnnnnnnntgttcaaatact |
318 |
Q |
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| T |
43110173 |
acataatttccctataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgaaaaaaatgttcaaatact |
43110074 |
T |
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| Q |
319 |
tttcaattttattttgaattcaattttaacnnnnnnnngggaaagttgtctagtgcatcacgttttattatgtgttgtccttt |
401 |
Q |
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| T |
43110073 |
tttcaattttattttgatttcaattttaacaaaaaaagggg-aagttgtctagtgcatagctttttattctgtgttgtccttt |
43109992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 26314837 - 26314678
Alignment:
| Q |
19 |
acaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaag---gaaggttgagaattttgccttacc |
115 |
Q |
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| T |
26314837 |
acaattctaaagcactttggaattagggaatgtttctcggagattaacactaatccaggttatgttgatgaagaaggaagattgagaattttgcctttct |
26314738 |
T |
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| Q |
116 |
atgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgt |
175 |
Q |
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| T |
26314737 |
atgatctcaacaagcctcctcacacatgtaatttgtgccctccaaacatgtgcaaggtgt |
26314678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 5272459 - 5272353
Alignment:
| Q |
26 |
tgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatct |
122 |
Q |
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| T |
5272459 |
tgaagcatttgggaattagtgaatgcttctcagagattaactctaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgattt |
5272360 |
T |
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| Q |
123 |
caataag |
129 |
Q |
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| T |
5272359 |
caataag |
5272353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 5250134 - 5250208
Alignment:
| Q |
58 |
gagattaacactaatccaggttatgttgatgaa---ggaaggttgagaattttgccttaccatgatctcaataag |
129 |
Q |
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| T |
5250134 |
gagattaacactaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataag |
5250208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 5269315 - 5269380
Alignment:
| Q |
19 |
acaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgtt |
84 |
Q |
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| T |
5269315 |
acaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaatcctggttatgtt |
5269380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 5276406 - 5276332
Alignment:
| Q |
58 |
gagattaacactaatccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
129 |
Q |
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| T |
5276406 |
gagattaacactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5276332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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