View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14320_low_7 (Length: 412)

Name: NF14320_low_7
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14320_low_7
NF14320_low_7
[»] chr1 (13 HSPs)
chr1 (1-412)||(43472828-43473224)
chr1 (320-398)||(32035195-32035273)
chr1 (325-398)||(32035335-32035408)
chr1 (320-393)||(41770963-41771036)
chr1 (336-396)||(35078079-35078139)
chr1 (320-400)||(39313411-39313491)
chr1 (320-393)||(7731252-7731325)
chr1 (320-393)||(37392464-37392537)
chr1 (319-398)||(7731520-7731600)
chr1 (352-400)||(15142515-15142563)
chr1 (334-398)||(29700529-29700593)
chr1 (350-398)||(31238664-31238712)
chr1 (319-398)||(37392189-37392269)
[»] chr5 (9 HSPs)
chr5 (319-399)||(42859116-42859196)
chr5 (320-399)||(13861252-13861331)
chr5 (320-393)||(20405276-20405348)
chr5 (320-393)||(34992093-34992166)
chr5 (320-395)||(22497269-22497344)
chr5 (320-399)||(22554030-22554109)
chr5 (335-371)||(21112002-21112038)
chr5 (320-399)||(31289767-31289846)
chr5 (339-400)||(22498860-22498921)
[»] chr6 (2 HSPs)
chr6 (347-399)||(14911448-14911500)
chr6 (338-400)||(11527452-11527514)
[»] chr8 (2 HSPs)
chr8 (320-403)||(32094985-32095068)
chr8 (319-398)||(37745142-37745221)
[»] chr7 (10 HSPs)
chr7 (319-393)||(19628881-19628955)
chr7 (319-393)||(46735897-46735971)
chr7 (163-238)||(13881921-13881996)
chr7 (319-393)||(46736531-46736605)
chr7 (320-393)||(46369854-46369927)
chr7 (320-398)||(29530611-29530689)
chr7 (340-393)||(21690145-21690198)
chr7 (320-400)||(42586331-42586411)
chr7 (319-398)||(46370122-46370204)
chr7 (319-393)||(7668136-7668210)
[»] chr2 (6 HSPs)
chr2 (319-393)||(347675-347749)
chr2 (319-393)||(348297-348371)
chr2 (343-393)||(13844583-13844631)
chr2 (344-399)||(20630093-20630148)
chr2 (319-389)||(5602277-5602347)
chr2 (344-400)||(20002118-20002174)
[»] chr4 (7 HSPs)
chr4 (346-399)||(33881562-33881615)
chr4 (319-393)||(14203929-14204003)
chr4 (320-393)||(37082433-37082506)
chr4 (319-398)||(14204555-14204633)
chr4 (320-396)||(2491653-2491729)
chr4 (352-399)||(24551282-24551329)
chr4 (320-400)||(44469022-44469102)
[»] chr3 (11 HSPs)
chr3 (320-385)||(26243367-26243432)
chr3 (320-393)||(4333914-4333987)
chr3 (320-393)||(21631163-21631236)
chr3 (320-385)||(26121184-26121249)
chr3 (319-398)||(12012249-12012328)
chr3 (8-41)||(15974594-15974627)
chr3 (320-393)||(42371340-42371413)
chr3 (320-400)||(13661617-13661697)
chr3 (340-402)||(32981277-32981339)
chr3 (323-399)||(4148608-4148684)
chr3 (339-399)||(32981594-32981654)
[»] scaffold2013 (1 HSPs)
scaffold2013 (320-393)||(499-572)
[»] scaffold0257 (1 HSPs)
scaffold0257 (345-399)||(21617-21671)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 43472828 - 43473224
Alignment:
Q  1 aaaataaaagaacaaaaggaga--aggggacataaaccaaaactttaatcatatttattcaacaacnnnnnnnttaatcgtaatccaataaagtttactt 98  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||    
T  43472828 aaaataaaagaacaaaaggagagaagaggacataaaccaaaactttaatcatatttattcaacaacaaaaaaattaatcgtaatccaataaagtgtactt 43472927  T
Q  99 acatcgatatccctctatcgtttattttggttcattgtgttgattttatctgtcatatacaagtttctatcatcaacaattattaaaatacatgcattgc 198  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  43472928 acatcgacatccctttatcgtttattttggttcattgtattgattttatctgtcatataaaaatttctatcatcaacaattattaaaatacatgcattgc 43473027  T
Q  199 atcatcaaatcaccaacacctgcaactcataaaagagtgtcatacataagtagaaggagggaacaaattgttttaaattttgcnnnnnnnnccattaaac 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||        |||||||||    
T  43473028 atcatcaaatcaccaacacatgcaactcataaaagagtgtcatacataagtagaaagaggaaacaaattgttttaaattttgc-aaaaagaccattaaac 43473126  T
Q  299 acatgattatattgttagtagaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    ||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43473127 acat----------------gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 43473210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 32035195 - 32035273
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    ||||||||||||| |||  ||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||||    
T  32035195 aaattaagaagatcatgggttttaaaaaggacaattatgaaattttggaggagtgcgatttttatatattgttaataga 32035273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 32035335 - 32035408
Alignment:
Q  325 aagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    |||||||| |||  ||||||||||||||||||| || |||||||| | || |||||||||||||||||||||||    
T  32035335 aagaagattatgggttttaaaaaggacaattatgaatttttgctgaaatatgatttttatatattgttagtaga 32035408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 41771036 - 41770963
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  41771036 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 41770963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 35078139 - 35078079
Alignment:
Q  336 gatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagta 396  Q
    |||||| ||||||||||| |||||||||||| ||| ||| || ||||||||||||||||||    
T  35078139 gattttaaaaaaggacaactataaaattttggtggggtatgaattttatatattgttagta 35078079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 39313411 - 39313491
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    |||||||| ||||||| | |||||| ||||||  |||| |||||||  |||| | ||||||||||||||||||||||||||    
T  39313411 aaattaaggagataattagttttaataaggacggttatgaaattttattggatttcgatttttatatattgttagtagata 39313491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 7731252 - 7731325
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| | || |  ||||||||||||||||||    
T  7731252 aaattaagaagataatgagttttaataaggattattatgaaattttggtagactttgatttttatatattgtta 7731325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 37392537 - 37392464
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| | || |  ||||||||||||||||||    
T  37392537 aaattaagaagataatgagttttaataaggattattatgaaattttggtagactttgatttttatatattgtta 37392464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 7731520 - 7731600
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatt-tttatatattgttagtaga 398  Q
    ||||||||||||||| ||| |||||| ||||||  |||||||||||||  ||| | ||||| | |||||||||||||||||    
T  7731520 gaaattaagaagatagtgaattttaataaggacggttataaaattttgaaggacttcgattatatatatattgttagtaga 7731600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 15142563 - 15142515
Alignment:
Q  352 aattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    |||||||||| ||| || ||| |||||||||||||||||||||||||||    
T  15142563 aattataaaaatttcctcgagaacgatttttatatattgttagtagata 15142515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 29700529 - 29700593
Alignment:
Q  334 atgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    |||| |||||| ||||| |||||| |||||||| |  | | ||||||||||||||||||||||||    
T  29700529 atgagttttaacaaggaaaattatgaaattttgttaaacttcgatttttatatattgttagtaga 29700593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 31238664 - 31238712
Alignment:
Q  350 acaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    |||||||||||| |||| | |||||||||||||||||| ||| ||||||    
T  31238664 acaattataaaaatttgtttgagtacgatttttatatactgtcagtaga 31238712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 37392269 - 37392189
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatt-tttatatattgttagtaga 398  Q
    ||||||||||||||| ||| |||||| ||||||  |||| ||||||||  ||| | ||||| | |||||||||||||||||    
T  37392269 gaaattaagaagatagtgaattttaataaggacggttatgaaattttgaaggacttcgattatatatatattgttagtaga 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 42859116 - 42859196
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    ||||||||| ||||||||| ||||||||||||  ||| |||||||||||| || | |||||||||||||||||||||||||    
T  42859116 gaaattaaggagataatgagttttaaaaaggaggattgtaaaattttgctagacttcgatttttatatattgttagtagat 42859196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 13861252 - 13861331
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||| |||| |||| |||||  || ||||||||| ||||||||||| | | |||||||||||||||||||||||||    
T  13861252 aaattaaggagatcatgaattttattaaagacaattatgaaattttgctgaacttcgatttttatatattgttagtagat 13861331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 20405276 - 20405348
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| || ||||||||||||||||||    
T  20405276 aaattaagaagataatgagttttaataaggattattatgaaattttggtggacta-gatttttatatattgtta 20405348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 34992166 - 34992093
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  34992166 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 34992093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 22497269 - 22497344
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagt 395  Q
    |||||||  |||| |||| |||||| ||||||||||||||||||||| || | | | |||||||||||||||||||    
T  22497269 aaattaaagagatcatgagttttaataaggacaattataaaattttgttgtacttcaatttttatatattgttagt 22497344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 22554109 - 22554030
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||| |||| |||  |||||  |||||| ||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  22554109 aaattaaggagattatgtgttttagtaaggactattatgaaatttttctggacttcgatttttatatattgttagtagat 22554030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 21112038 - 21112002
Alignment:
Q  335 tgatttttaaaaaggacaattataaaattttgctgga 371  Q
    |||||||||||||||||||||||||||||||| ||||    
T  21112038 tgatttttaaaaaggacaattataaaattttgttgga 21112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 31289846 - 31289767
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||| ||||  ||| |||||| |||||| ||||||||||||  ||||| | | ||||||||| |||||||||||||    
T  31289846 aaattaaggagatcttgagttttaataaggacgattataaaatttcactggacttcaatttttataaattgttagtagat 31289767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 22498860 - 22498921
Alignment:
Q  339 ttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    |||||| ||||||||| || |||||||| || | | |||||||||| |||||||||||||||    
T  22498860 ttttaataaggacaatgatgaaattttgttgtacttcgatttttatttattgttagtagata 22498921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 14911448 - 14911500
Alignment:
Q  347 aggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  14911448 aggacaattataaaattttgctggacttcgatttttatatattgttagtagat 14911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 11527452 - 11527514
Alignment:
Q  338 tttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    ||||||||| |||| ||||||  | |||||| | |||||||||| ||||||||||||||||||    
T  11527452 tttttaaaatggacgattataggaatttgctagggtacgattttcatatattgttagtagata 11527514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 32095068 - 32094985
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaaa 403  Q
    |||||||| |||| |||| |||||| || ||| ||||| ||||||||||||| |  ||||||||||||||||||||||||||||    
T  32095068 aaattaaggagatcatgagttttaataaagactattatgaaattttgctggactttgatttttatatattgttagtagataaaa 32094985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 37745221 - 37745142
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    ||||||||||||||||||| |||||| |||||| | ||| |||||||| |||| |  |||||||||||||||||||||||    
T  37745221 gaaattaagaagataatgagttttaataaggacgactatgaaattttggtggactttgatttttatatattgttagtaga 37745142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 19628955 - 19628881
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  19628955 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 19628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 46735897 - 46735971
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  46735897 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 46735971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 13881921 - 13881996
Alignment:
Q  163 ttctatcatcaacaattattaaaatacatgcattgcatcatcaaatcaccaacacctgcaactcataaaagagtgt 238  Q
    |||||||||||||  ||||||||||| |||||||||||||||||| ||| ||||  ||  ||||||||||||||||    
T  13881921 ttctatcatcaactgttattaaaatatatgcattgcatcatcaaagcactaacatttgtcactcataaaagagtgt 13881996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 46736531 - 46736605
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  46736531 gaaattaagaagataatgagttttaataaggattattattaaattttggtggactttgatttttatatattgtta 46736605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 46369854 - 46369927
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  46369854 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 46369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 29530611 - 29530689
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    |||||||| |||| |||| |||||| |||||| ||||| ||||||||||  | |  |||||||||||||||||||||||    
T  29530611 aaattaaggagatcatgagttttaataaggacgattatgaaattttgctttactttgatttttatatattgttagtaga 29530689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 21690198 - 21690145
Alignment:
Q  340 tttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||| ||||||||||||||||   |||| |||||||||||||||||||||    
T  21690198 tttaaaaaagacaattataaaatttaaatggactacgatttttatatattgtta 21690145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 42586331 - 42586411
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    |||||||| |||  |||| |||||| ||| || ||||| |||||||||| || | ||||||||||||||||||| ||||||    
T  42586331 aaattaaggagaacatgagttttaataagaacgattattaaattttgctagacttcgatttttatatattgttaatagata 42586411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 46370122 - 46370204
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttt---tatatattgttagtaga 398  Q
    ||||||||||||||| ||| |||||| |||||| ||||| ||||||||  ||| | |||||||   |||||||||||||||||    
T  46370122 gaaattaagaagatagtgaattttaataaggacgattatgaaattttgaaggacttcgattttatatatatattgttagtaga 46370204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 7668136 - 7668210
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |   ||||||||| |||||||    
T  7668136 gaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttaatttttatagattgtta 7668210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 347749 - 347675
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||  |||||||||||||| |||| |  ||||||||||||||||||    
T  347749 gaaattaagaagataatgagttttaataaggattattataaaattttggtggactttgatttttatatattgtta 347675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 348371 - 348297
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  348371 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 348297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 13844583 - 13844631
Alignment:
Q  343 aaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  13844583 aaaaaggacaattataaaattttgtt--agtacaatttttatatattgtta 13844631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 20630093 - 20630148
Alignment:
Q  344 aaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||||||||||||| ||| |||   ||||||||||| |||||||||||||||    
T  20630093 aaaaggacaattataaaaatttactgctatacgatttttacatattgttagtagat 20630148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 5602347 - 5602277
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatatt 389  Q
    ||||| ||||||||||||| |||||| ||||||  |||| |||||||| |||| |  ||||||||||||||    
T  5602347 gaaataaagaagataatgagttttaataaggacggttatgaaattttggtggactttgatttttatatatt 5602277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 20002174 - 20002118
Alignment:
Q  344 aaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    ||||| ||||||||  ||||||| |||||||| ||||||||||| | ||||||||||    
T  20002174 aaaagaacaattatgtaattttggtggagtacaatttttatatactattagtagata 20002118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 33881615 - 33881562
Alignment:
Q  346 aaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  33881615 aaggacaattatgaaattttgttggagaacgatttttatatattgttagtagat 33881562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 14204003 - 14203929
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  14204003 gaaattaagaagataatgagttttaataaggattattatgaaattttgatggactttgatttttatatattgtta 14203929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 37082506 - 37082433
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  37082506 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 37082433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 14204633 - 14204555
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    ||||||||||||||||||| |||||| || ||| ||||| |||||||| |||| |  ||||||||| |||||||||||||    
T  14204633 gaaattaagaagataatgagttttaataaagacgattatgaaattttggtggactttgatttttat-tattgttagtaga 14204555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 2491729 - 2491653
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagta 396  Q
    |||||||| |||| || | |||||| |||||| ||||| |||||||| || | | ||||||||||||||||||||||    
T  2491729 aaattaaggagatcattaattttaataaggacgattatgaaattttggtgtacttcgatttttatatattgttagta 2491653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 24551282 - 24551329
Alignment:
Q  352 aattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||| | |||| |||||||| |||||||||||||||||||||||    
T  24551282 aattataagaatttgttggagtacaatttttatatattgttagtagat 24551329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 44469022 - 44469102
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    ||||||||  ||| |||| ||||||| ||||| ||||| ||||||||||| | | | | ||| ||||||||||||||||||    
T  44469022 aaattaaggtgatcatgagttttaaataggacgattatgaaattttgctgtacttcaactttcatatattgttagtagata 44469102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 26243367 - 26243432
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttata 385  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||||    
T  26243367 aaattgagaagataatgatttttaaaaaggacaattatgaaaatttgttagagtacaatttttata 26243432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 4333987 - 4333914
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  4333987 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 4333914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 21631236 - 21631163
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  21631236 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 21631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 26121184 - 26121249
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttata 385  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| |||| | |||||| |||||||||    
T  26121184 aaattgagaagataatgattttcaaaaaggacaattatgaaaatttgttagagtacaatttttata 26121249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 12012328 - 12012249
Alignment:
Q  319 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 398  Q
    ||||||||| ||||||||| ||||||  ||||  ||||| |||||||||| || | | ||||||||||||||||||||||    
T  12012328 gaaattaaggagataatgagttttaattaggaggattatgaaattttgctagacttcaatttttatatattgttagtaga 12012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 15974627 - 15974594
Alignment:
Q  8 aagaacaaaaggagaaggggacataaaccaaaac 41  Q
    ||||||||||||||||||||||||||||||||||    
T  15974627 aagaacaaaaggagaaggggacataaaccaaaac 15974594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 42371340 - 42371413
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    ||||||||||||||| || |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  42371340 aaattaagaagataacgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 42371413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 400
Target Start/End: Complemental strand, 13661697 - 13661617
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 400  Q
    |||||||  |||| |||| |||||| ||| || | ||| ||||||||||||| | ||||||||||| ||||||||||||||    
T  13661697 aaattaaagagatcatgagttttaataagaacgaatatgaaattttgctggacttcgatttttatacattgttagtagata 13661617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 32981277 - 32981339
Alignment:
Q  340 tttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaa 402  Q
    ||||| ||||||||| || |||||||   ||| | ||||||||||||||||||||||||||||    
T  32981277 tttaataaggacaatcatgaaattttaaaggacttcgatttttatatattgttagtagataaa 32981339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 4148608 - 4148684
Alignment:
Q  323 ttaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||  || | | | | |||||||||||||| ||||||    
T  4148608 ttaagaagatcatgagttttaaagaggacaattatgaaattttattgtacttcaacttttatatattgtttgtagat 4148684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 32981594 - 32981654
Alignment:
Q  339 ttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    |||||| || ||| ||||| |||||||| |||| | | |||||||||||||||||||||||    
T  32981594 ttttaataaagacgattatgaaattttgatggattgcaatttttatatattgttagtagat 32981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 572 - 499
Alignment:
Q  320 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 393  Q
    |||||||||||||||||| |||||| |||||  ||||| ||| |||| |||| |  ||||||||||||||||||    
T  572 aaattaagaagataatgagttttaataaggattattatgaaaatttggtggactttgatttttatatattgtta 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 21671 - 21617
Alignment:
Q  345 aaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 399  Q
    ||||||||||||||||| |||| || ||||| ||||||||||| ||| |||||||    
T  21671 aaaggacaattataaaaatttgttgtagtacaatttttatataatgtcagtagat 21617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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