View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14320_low_8 (Length: 409)

Name: NF14320_low_8
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14320_low_8
NF14320_low_8
[»] chr3 (6 HSPs)
chr3 (23-308)||(35776170-35776455)
chr3 (20-259)||(35869091-35869330)
chr3 (20-259)||(35854482-35854721)
chr3 (110-259)||(35842064-35842213)
chr3 (20-259)||(35759742-35759981)
chr3 (26-260)||(35737923-35738157)
[»] scaffold1335 (1 HSPs)
scaffold1335 (69-268)||(1828-2027)
[»] scaffold0891 (1 HSPs)
scaffold0891 (18-148)||(1-131)
[»] scaffold1268 (1 HSPs)
scaffold1268 (20-118)||(1-99)
[»] scaffold1267 (1 HSPs)
scaffold1267 (20-118)||(1-99)
[»] chr6 (14 HSPs)
chr6 (117-169)||(4482283-4482335)
chr6 (125-169)||(4575881-4575925)
chr6 (125-169)||(4627576-4627620)
chr6 (125-172)||(4258831-4258878)
chr6 (129-169)||(3173433-3173473)
chr6 (129-169)||(4265715-4265755)
chr6 (132-172)||(4462640-4462680)
chr6 (129-169)||(4488855-4488895)
chr6 (125-169)||(4513637-4513681)
chr6 (125-169)||(4517766-4517810)
chr6 (129-169)||(4558555-4558595)
chr6 (129-169)||(4587062-4587102)
chr6 (125-169)||(4594436-4594480)
chr6 (125-169)||(4603536-4603580)
[»] chr2 (1 HSPs)
chr2 (129-165)||(1349579-1349615)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 35776170 - 35776455
Alignment:
23 atcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagatttt 122  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   |||||| ||||||    
35776170 atcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgatttt 35776269  T
123 atcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgacctt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| | ||||||||||||||||||||||||||    
35776270 atcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacctttgcaacgaaagagtttggcaagttgcatgaaagggttcacatgacctt 35776369  T
223 gtactggaaatggtacaaatacagcatgaggcttttgttggatatgcgtagagggagaataagaatccatttttgttcaaatatca 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
35776370 gtactggaaatggtacaaatacagcatgaggcttttgttgaatatgcgtagagggagaataagaatccatttttgttcaaatatca 35776455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 35869091 - 35869330
Alignment:
20 aatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagat 119  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35869091 aatatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagat 35869190  T
120 tttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35869191 tttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgac 35869290  T
220 cttgtactggaaatggtacaaatacagcatgaggcttttg 259  Q
    ||||| ||||||||||| | |||||| |||||||||||||    
35869291 cttgtgctggaaatggtgctaatacaacatgaggcttttg 35869330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 35854482 - 35854721
Alignment:
20 aatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagat 119  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||   ||||||||||    
35854482 aatatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagaccattcacaaagtcttgtccaagagat 35854581  T
120 tttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35854582 tttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgac 35854681  T
220 cttgtactggaaatggtacaaatacagcatgaggcttttg 259  Q
    ||||| ||||||||||||| |||||| |||||||||||||    
35854682 cttgtgctggaaatggtactaatacaacatgaggcttttg 35854721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 35842064 - 35842213
Alignment:
110 tccaagagattttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaaggg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35842064 tccaagagattttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaaggg 35842163  T
210 ttcacatgaccttgtactggaaatggtacaaatacagcatgaggcttttg 259  Q
    ||||||||||||||| ||||||||||| | |||||| |||| ||||||||    
35842164 ttcacatgaccttgtgctggaaatggtgctaatacaacatgtggcttttg 35842213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 35759742 - 35759981
Alignment:
20 aatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagat 119  Q
    |||||||||||||||||||||||   |    || |||||||| |||||||||||||||||||||||||||||||| |||| | | ||   |||||| ||     
35759742 aatatcttgtgttgcatctttataaaaaaaaggcaaaccatcaggtatggtctcaaattgaaaatctggtagaccattcatataatcttgtccaagtgag 35759841  T
120 tttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgac 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| || || || |||||||    
35759842 tttaccaaacgtttgtggttgaattcagtgttcacaaaggttatgtggaaaccgttgcaacgcaggagtttagctagttgcattaagggattaacatgac 35759941  T
220 cttgtactggaaatggtacaaatacagcatgaggcttttg 259  Q
    | ||| ||||  |||| || |||||||||||  |||||||    
35759942 cctgtgctgggtatggcactaatacagcatgtagcttttg 35759981  T

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Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 35737923 - 35738157
Alignment:
26 ttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattttatc 125  Q
    |||||||||||  | ||| |||  ||| |||||||| ||||| ||||||||   |||||||||| ||||||| | ||| |||  ||||||||||||||||    
35737923 ttgtgttgcattctcatcagatggtggcaaaccatctggtatagtctcaaacctaaaatctggttgaccctttaaaaagtcatgtccaagagattttatc 35738022  T
126 aaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacc---gttgcaacgtaggagtttggctaattgcatgaaagggttcacatgacctt 222  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||    |||  |   |||| ||| |||||||||||||||||||| || |||||||    
35738023 aaacgtttgtggttgaattcattgttcacaaaggttatgtggaaaccaagtttgtta---aggattttagctaattgcatgaaagggtttacgtgacctt 35738119  T
223 gtactggaaatggtacaaatacagcatgaggcttttgt 260  Q
    || |||||||||||||| | ||  ||||||||||||||    
35738120 gtgctggaaatggtacacaaactacatgaggcttttgt 35738157  T

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Target: scaffold1335 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 2027 - 1828
Alignment:
69 gtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
2027 gtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattttatcaaacgtttgtggttgaattcagtgttcacaaaggttatatgga 1928  T
169 aaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatgaggcttttgttggatatg 268  Q
    |||| |||||||| | ||||||||||| |||||| |  |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||    
1927 aacctttgcaacggaagagtttggctagttgcatcattgggttcacatgaccttgtgctggaaatggtacaaatacagcatgtggtttttgttgggtatg 1828  T

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Target: scaffold0891 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 131 - 1
Alignment:
18 ataatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
131 ataatatcttgtgttgcatctttatctgattctggtaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagag 32  T
118 attttatcaaacgtttgtggttgaattcagt 148  Q
    |||||||||||||||||||||||||||||||    
31 attttatcaaacgtttgtggttgaattcagt 1  T

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Target: scaffold1268 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 99 - 1
Alignment:
20 aatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagaga 118  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
99 aatatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagaga 1  T

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Target: scaffold1267 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 99 - 1
Alignment:
20 aatatcttgtgttgcatctttatctgattctggtaaaccatcgggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagaga 118  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
99 aatatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagaga 1  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 4482283 - 4482335
Alignment:
117 gattttatcaaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    ||||||| |||||||||||| ||| |||| ||||| |||||||||||||||||    
4482283 gattttagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaa 4482335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4575881 - 4575925
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||    
4575881 caaacgtttgtgattgtattcagtgttaacaaaggttatgtgaaa 4575925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4627576 - 4627620
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||    
4627576 caaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaa 4627620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 4258878 - 4258831
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacc 172  Q
    |||||||||||| ||  |||||||||| ||||||||||||||||||||    
4258878 caaacgtttgtgattatattcagtgttgacaaaggttatgtgaaaacc 4258831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 3173433 - 3173473
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||| ||| |||||||||| |||||||||||||||||    
3173433 cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa 3173473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 4265755 - 4265715
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||| ||| |||||||||| |||||||||||||||||    
4265755 cgtttgtgattgtattcagtgttgacaaaggttatgtgaaa 4265715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 4462640 - 4462680
Alignment:
132 ttgtggttgaattcagtgttcacaaaggttatgtgaaaacc 172  Q
    ||||| ||| |||||||||| ||||||||||||||||||||    
4462640 ttgtgattgtattcagtgttgacaaaggttatgtgaaaacc 4462680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 4488895 - 4488855
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||| ||| |||||||||| |||||||||||||||||    
4488895 cgtttgtgattgtattcagtgttgacaaaggttatgtgaaa 4488855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4513681 - 4513637
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| ||| |||| ||||| |||||||||||||||||    
4513681 caaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 4513637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4517766 - 4517810
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| ||| |||| ||||| |||||||||||||||||    
4517766 caaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaa 4517810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 4558555 - 4558595
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
4558555 cgtttgtggttgtattcagtgtttacataggttatgtgaaa 4558595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 4587062 - 4587102
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||| ||| |||||||||| |||||||||||||||||    
4587062 cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa 4587102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4594436 - 4594480
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    ||||||||| || ||| |||||||||| |||||||||||||||||    
4594436 caaacgtttatgattgtattcagtgttgacaaaggttatgtgaaa 4594480  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4603536 - 4603580
Alignment:
125 caaacgtttgtggttgaattcagtgttcacaaaggttatgtgaaa 169  Q
    |||||||||||| ||| |||| ||||| |||||||||||||||||    
4603536 caaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaa 4603580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 1349615 - 1349579
Alignment:
129 cgtttgtggttgaattcagtgttcacaaaggttatgt 165  Q
    ||||||||||||||||||||||| ||||| |||||||    
1349615 cgtttgtggttgaattcagtgttgacaaatgttatgt 1349579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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