View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14321_high_3 (Length: 666)
Name: NF14321_high_3
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 21044270 - 21044026
Alignment:
| Q |
19 |
gttttttcgttaaatgggcttccctttatttgatttaaataagtaattcaaataacaagttttaatttatgtagcaatgacatttcagattgaaagtgtt |
118 |
Q |
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| T |
21044270 |
gttttttcgttaaatgggcttccctttatttgatttaaataagtgattcaaataacaagttttaatttatgtagcaatgacatttcagattgaaagcgtt |
21044171 |
T |
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| Q |
119 |
tgacacttgtgagtgattttgagtgtcttgtatatgtgtctgtgtcagtgcttcgtaggttctaacgagtaattaaaatttatgtgaaccaggaagaagg |
218 |
Q |
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| T |
21044170 |
tgacacttgtgagtgattttgagtgtcttgtatatgcgtctgtgtcagtgcttcgtaggttctaacgagtaattaaaatttatgtgaaccaggaagaagg |
21044071 |
T |
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| Q |
219 |
ttattgggttggatgatcttcttaatgaacactacaaagaacagg |
263 |
Q |
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| T |
21044070 |
ttattgggttggatgatcttcttaatgaacactacaaagaacagg |
21044026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 457 - 666
Target Start/End: Complemental strand, 21043836 - 21043627
Alignment:
| Q |
457 |
ttgttactgatcacctttgcattcttatccagttgaaagcctttggagaagaaaatgaaattccagtttggggggtagaagtttttggtgaacaggtcat |
556 |
Q |
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| T |
21043836 |
ttgttactgattacctttccattcttatccagttgaaagcctttggagaagaaaatgaaattccagtttggggggtagaagtttttggtgaacaggtcat |
21043737 |
T |
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| Q |
557 |
tatactaaatcaaatgcccagtagttctctatgtatacggttgtttttatctcttaatcgtttgtatacttcatattagtaatgttttcattttgggtgc |
656 |
Q |
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| T |
21043736 |
tatactaaatcaaatgctcagtagttctctatgtatacggttgtttttatctcttaatcgtttgtatacttcatattagtaatgttttcattttgtgtgc |
21043637 |
T |
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| Q |
657 |
tgcagaaacc |
666 |
Q |
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| T |
21043636 |
tgcagaaacc |
21043627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 21043960 - 21043890
Alignment:
| Q |
329 |
tacgatgatgaagatcgtaaggaagctcatttgaataggctagttgagaaatgtcacaatcaggtataata |
399 |
Q |
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| T |
21043960 |
tacgatgatgaagatcgtaaggaagctcatttgaataggctagttgagaaatgtcacaatcaggtataata |
21043890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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