View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14321_low_10 (Length: 324)
Name: NF14321_low_10
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 7077226 - 7076956
Alignment:
| Q |
40 |
atatattagatagatagttttagcaaataaaaaccaatgttaagatataatggtgtatgttgaaattttattctagaaaaatgtttgtacaaccatttta |
139 |
Q |
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| T |
7077226 |
atatattagatagatagttttagcaaataaaaaccaatgttaagatataatggtgtatgttgaaattttatactagaaaaatgttcctacaaccatttta |
7077127 |
T |
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| Q |
140 |
attacaacttgtagaacaacnnnnnnnnnnnnnnnnnnattggacagaaacaatataaaaagaaaggaagagaaagttgtctcaaaattatcttaaaata |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| |
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| T |
7077126 |
attacaacttgtagaacaactttttattttttatttttattggacagaaacaatatagaaagaaaggaagagaaagttgtctcaaaatcatctcataata |
7077027 |
T |
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| Q |
240 |
atgtataaataatatttctcattttataatttaagcaatacaataaagatcgttgaaatatgagacatata |
310 |
Q |
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| T |
7077026 |
atgtataaataatatttcttattttataatttaagcaatacaataaagatcgttgaaatatgagacctata |
7076956 |
T |
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