View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14321_low_2 (Length: 774)
Name: NF14321_low_2
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 20 - 774
Target Start/End: Original strand, 41759342 - 41760087
Alignment:
| Q |
20 |
tgcctaacataccatctgcttcatattaattttccaactatagacttttctgaaaaagaccaagctaagggtattcaaacaatatactagtaacaaatac |
119 |
Q |
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| T |
41759342 |
tgcctaacataccatctgcttcatattaattttccaactatagacttttctgaaaaagaccaagggta---tattcaaacaatatactagtaacaaatac |
41759438 |
T |
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| Q |
120 |
atagtagcctataaaaatacatataacaaatacagnnnnnnnnctcgggcatata----acaaatacagttatccgtcaaatttatttatgatattattt |
215 |
Q |
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| T |
41759439 |
atagtagcctataaaaatacatataacaaatacagttttttttctcaggcatatatataacaaatacagttatccgtcaaatttatttatgatattattt |
41759538 |
T |
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| Q |
216 |
ttaaaacatttcaacaaatatttatgcactaagatttgattaattagatgactagtt------ttgactttgtatttatgataatagtggatataattgt |
309 |
Q |
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| T |
41759539 |
ttaaaacatttcaacaaatatttatgc---------ttcttaattagttgactagttctatcgttgactttgtatttatgataatagtggatataattgt |
41759629 |
T |
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| Q |
310 |
ttaataaaatcaatttgataaaattattgatttttcttcaatttataacttattttagtgtgtgtgaaataacttagctagtataacactcctaataatg |
409 |
Q |
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| T |
41759630 |
ttaataaaatcaatttgataaaattattgatttttcttcaatttataacttattttagtgtgtgtgaaataacttagctagtataacactcctaataatg |
41759729 |
T |
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| Q |
410 |
gaaaacataattttcttttctcttcttgattcgaaccatattcatcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatca |
509 |
Q |
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| T |
41759730 |
gaaaacataattttcttttctcttcttgattcgaaccatattcatcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatca |
41759829 |
T |
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| Q |
510 |
attgaaaagtctttaaattattttcagaaaccaacaaaaataataatagaatcaccctctccagtacacaccacaccagtcaccactatatataatgagg |
609 |
Q |
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| T |
41759830 |
attgaaatgtctttaaattattttcagaaaccaacaaaaataataatagaatcaccctctccagta-----cacaccagtcaccactatatataatgagg |
41759924 |
T |
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| Q |
610 |
ccttcctggctttaattcaccaaaccatcatatctcactacttacaatctaccaaacctcatttcattctctttctttacagagtgaacactatggacaa |
709 |
Q |
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| T |
41759925 |
ccttcctggctttaattcaccaaaccatcatatctcactacttacaatctaccaaacctcatttcattctctttcttt--agagtgaacactatggacaa |
41760022 |
T |
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| Q |
710 |
tatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatc |
774 |
Q |
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| T |
41760023 |
tatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatc |
41760087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 689 - 769
Target Start/End: Original strand, 41794854 - 41794934
Alignment:
| Q |
689 |
cagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattc |
769 |
Q |
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| T |
41794854 |
cagagtaaacactatggacaatatgtgtcgattaaaattccaaaatatatcaacactgactcaagggatgaaaactcattc |
41794934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 581 - 650
Target Start/End: Original strand, 41794762 - 41794831
Alignment:
| Q |
581 |
cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactac |
650 |
Q |
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| T |
41794762 |
cacaccaatcagcactatatataatgagtcattcatgcccttaattcaccaaaccatcctatctcactac |
41794831 |
T |
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