View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14321_low_6 (Length: 429)
Name: NF14321_low_6
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 10888209 - 10887807
Alignment:
| Q |
8 |
agaagcaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888209 |
agaaccaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgta |
10888110 |
T |
|
| Q |
108 |
ctttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888109 |
ctttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttcc |
10888010 |
T |
|
| Q |
208 |
ttcgtctaccttattgcttttttcggcactgccttcatctttcattacgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggag |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
10888009 |
ttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggag |
10887910 |
T |
|
| Q |
308 |
tcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcggg |
407 |
Q |
| |
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| ||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10887909 |
ttgtgccgaagaagctacctatgttaacaccaccgaagatatctgaccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcggg |
10887810 |
T |
|
| Q |
408 |
atc |
410 |
Q |
| |
|
||| |
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|
| T |
10887809 |
atc |
10887807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 410
Target Start/End: Original strand, 10866214 - 10866558
Alignment:
| Q |
57 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
156 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10866214 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10866313 |
T |
|
| Q |
157 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
256 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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|
| T |
10866314 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10866413 |
T |
|
| Q |
257 |
atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca |
356 |
Q |
| |
|
|||| || ||||| |||||| |||||||| || ||||||| |||| ||||||||||||| |||||| ||||| ||||| || ||||| |
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|
| T |
10866414 |
atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca |
10866504 |
T |
|
| Q |
357 |
gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||| || ||||| |
|
|
| T |
10866505 |
aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatc |
10866558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 410
Target Start/End: Complemental strand, 10874091 - 10873747
Alignment:
| Q |
57 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
156 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10874091 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10873992 |
T |
|
| Q |
157 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
256 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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|
| T |
10873991 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10873892 |
T |
|
| Q |
257 |
atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca |
356 |
Q |
| |
|
|||| || ||||| |||||| |||||||| || ||||||| |||| ||||||||||||| |||||| ||||| ||||| || ||||| |
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|
| T |
10873891 |
atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca |
10873801 |
T |
|
| Q |
357 |
gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||| || ||||| |
|
|
| T |
10873800 |
aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatc |
10873747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 410
Target Start/End: Complemental strand, 10879162 - 10878818
Alignment:
| Q |
57 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
156 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879162 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10879063 |
T |
|
| Q |
157 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
256 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
|
|
| T |
10879062 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10878963 |
T |
|
| Q |
257 |
atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca |
356 |
Q |
| |
|
|||| || ||||| |||||| |||||||| || ||||||| |||| ||||||||||||| |||||| ||||| ||||| || ||||| |
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|
| T |
10878962 |
atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca |
10878872 |
T |
|
| Q |
357 |
gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||| || ||||| |
|
|
| T |
10878871 |
aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatc |
10878818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 410
Target Start/End: Complemental strand, 10884233 - 10883889
Alignment:
| Q |
57 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
156 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10884233 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10884134 |
T |
|
| Q |
157 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
256 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
|
|
| T |
10884133 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10884034 |
T |
|
| Q |
257 |
atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca |
356 |
Q |
| |
|
|||| || ||||| |||||| |||||||| || ||||||| |||| ||||||||||||| |||||| ||||| ||||| || ||||| |
|
|
| T |
10884033 |
atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca |
10883943 |
T |
|
| Q |
357 |
gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||| || ||||| |
|
|
| T |
10883942 |
aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatc |
10883889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 290
Target Start/End: Original strand, 39675780 - 39676020
Alignment:
| Q |
50 |
cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac |
149 |
Q |
| |
|
|||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39675780 |
cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac |
39675879 |
T |
|
| Q |
150 |
acctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatcttt |
249 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| ||||||||||||| |||| | | ||||||||| ||||| || ||| |||||||||| || |
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|
| T |
39675880 |
acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatcctt |
39675979 |
T |
|
| Q |
250 |
cattacgatgatgatgaagacgaagttgtcgacatttctgc |
290 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||| |||| |
|
|
| T |
39675980 |
cattacgatgaagaagaagatgaagttgctgacattgctgc |
39676020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 10045775 - 10045968
Alignment:
| Q |
52 |
tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac |
151 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| ||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |||| |
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|
| T |
10045775 |
tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac |
10045874 |
T |
|
| Q |
152 |
ctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcat |
245 |
Q |
| |
|
|||| || || |||||| |||||||||||| | ||| ||||||||||| |||||||| | |||||||| ||||| ||||||| || |||||| |
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|
| T |
10045875 |
ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcat |
10045968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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