View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14321_low_7 (Length: 351)
Name: NF14321_low_7
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_7 |
 | |
|
| [»] scaffold1995 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 38546679 - 38546357
Alignment:
| Q |
18 |
aatgttgccatagcacttcctaaactatgtcccgttaacgtaatactaacttcttcgttaggaaattttgctaacaaccttctcacttcccctaaaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38546679 |
aatgttgccatagcacttcctaaactatgtcccgttaacgtaatactaacttcttcgttaggaaatttcgctaacaaccttctcacttcccctaaaactt |
38546580 |
T |
|
| Q |
118 |
gttctcttgcggaatatttacaataaccgtcttttatgtgtctatcggtgtacatatcaagaaaacctgcttctactcgaacgtcgttgtccggacaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38546579 |
gttctcttgcggaatatttacaataaccgtcttttatgtgtctatcggtgtacatatcgagaaaacctgcttctactcgaacgtcgttgtccggacaagg |
38546480 |
T |
|
| Q |
218 |
aatgtctttgtaaagaggtttaaggtaattttgaagattggctacccattcgacatgagtaacggttcctcgccaagcaataacgatgtctctacgacct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38546479 |
aatgtctttgtaaagaggtttaaggtaattttgaagattggctacccattcaacatgagtaacggttcctcgccaagcaataacgatgtctctacgacct |
38546380 |
T |
|
| Q |
318 |
gttagttcc-aaacataaatatt |
339 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
38546379 |
gttagttccaaaacataaatatt |
38546357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 38553129 - 38552810
Alignment:
| Q |
18 |
aatgttgccatagcacttcctaaactatgtcccgttaacgtaatactaacttcttcgttaggaaattttgctaacaaccttctcacttcccctaaaactt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38553129 |
aatgttgccatagcactacctaaactatgtcccgttaacgtaatactaacttcttcgttaggaaatttcgctaacaaccttctcacttcccctaaaactt |
38553030 |
T |
|
| Q |
118 |
gttctcttgcggaatatttacaataaccgtcttttatgtgtctatcggtgtacatatcaagaaaacctgcttctactcgaacgtcgttgtccggacaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38553029 |
gttctcttgcggaatatttacaataaccgtcttttatgtgtctatcggtgtacatatcgagaaaacctgcttctactcgaacgtcgttgtccggacaagg |
38552930 |
T |
|
| Q |
218 |
aatgtctttgtaaagaggtttaaggtaattttgaagattggctacccattcgacatgagtaacggttcctcgccaagcaataacgatgtctctacgacct |
317 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38552929 |
aatgtcttggtaaataggtttaagaaaattttgaagattggctacccattcgacatgagtaacggttcctcgccaagcgataacgatgtctctacgacct |
38552830 |
T |
|
| Q |
318 |
gttagttccaaacataaata |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38552829 |
gttagttccaaacataaata |
38552810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1995 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 792 - 473
Alignment:
| Q |
18 |
aatgttgccatagcacttcctaaactatgtcccgttaacgtaatactaacttcttcgttaggaaattttgctaacaaccttctcacttcccctaaaactt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
792 |
aatgttgccatagcactccctaaactatgtccggttaacgtaatacttacttcttcgttaggaaatttcgctaacaaccttctcacttcccctaaaacct |
693 |
T |
|
| Q |
118 |
gttctcttgcggaatatttacaataaccgtcttttatgtgtctatcggtgtacatatcaagaaaacctgcttctactcgaacgtcgttgtccggacaagg |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
692 |
gttctcttgaggaatatttacaataaccgtcttttgtttgtctatcggtgtacatatcaagaaaacctgcttctactcgaacatcgttgtctggacaagg |
593 |
T |
|
| Q |
218 |
aatgtctttgtaaagaggtttaaggtaattttgaagattggctacccattcgacatgagtaacggttcctcgccaagcaataacgatgtctctacgacct |
317 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
592 |
aatgtcttggtaaataggtttaagaaaattttgaagattggctacccattcgacatgagtaacggttcctcgccaagcgataacgatgtctctacgacct |
493 |
T |
|
| Q |
318 |
gttagttccaaacataaata |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
492 |
gttagttccaaacataaata |
473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University