View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14321_low_8 (Length: 349)
Name: NF14321_low_8
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 3278270 - 3277949
Alignment:
| Q |
11 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagtataattcattt |
110 |
Q |
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| T |
3278270 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagtataattcattt |
3278171 |
T |
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| Q |
111 |
ttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacattcagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3278170 |
ttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacattcagc |
3278071 |
T |
|
| Q |
211 |
aatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaatataggatgttacaatattactcttaatcaaatcaacattacttcaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3278070 |
aatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaagataggatgttacaatattactcttaatcaaatcaacattacttcaa |
3277971 |
T |
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| Q |
311 |
ttaatcgaaagaaaccagcttc |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
3277970 |
ttaatcgaaagaaaccagcttc |
3277949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 3272530 - 3272219
Alignment:
| Q |
11 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagta-----taatt |
105 |
Q |
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|||||||||| ||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||| | ||||| |
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| T |
3272530 |
atatcatcttcgaggatataatactatatcaaacaaattaccctgtatatatcgaccaacattatatgaagaccccagaacaggttaacaaaaaataatt |
3272431 |
T |
|
| Q |
106 |
catttttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacat |
205 |
Q |
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| T |
3272430 |
aatttttctctcacgtagtgttgattaatttttgt--------------tttcatt---tttgttgcagcaccaagcagtgaaaataagtaacatcaaat |
3272348 |
T |
|
| Q |
206 |
tcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaatataggatgttacaatattactcttaatcaaatcaacattac |
305 |
Q |
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|||| |||||| ||||||||||||||| ||| ||||| |||| ||||||||||| || ||||| ||||| |||| || |||||||||||||| ||||| |
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| T |
3272347 |
tcagtaatatccatggaacatgtattgatgaaaatgctattgtattggattgtgctaagatagggtgttatgatatcacccttaatcaaatcaaaattac |
3272248 |
T |
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| Q |
306 |
ttcaattaatcgaaagaaaccagcttctg |
334 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3272247 |
ttcaattaatcgaaagaaaccagcttctg |
3272219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 323
Target Start/End: Complemental strand, 2447969 - 2447848
Alignment:
| Q |
202 |
acattcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaatataggatgttacaatattactcttaatcaaatcaaca |
301 |
Q |
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||||| || ||||||||||||||||| | ||| || |||||| || | | ||||||||||||||||| ||| |||||||||| | | |||||||||| |
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| T |
2447969 |
acatttagtaatatctatggaacatgcagtggtgatgatgctatttttctagattgtgccaatatagggtgtgacaatattaccttggaacaaatcaaca |
2447870 |
T |
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| Q |
302 |
ttacttcaattaatcgaaagaa |
323 |
Q |
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|||| ||| || ||| |||||| |
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| T |
2447869 |
ttacctcagttgatccaaagaa |
2447848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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