View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14321_low_9 (Length: 335)
Name: NF14321_low_9
Description: NF14321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14321_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 36292640 - 36292334
Alignment:
| Q |
16 |
tattggacatcacatggtgagtgtctttgaaaaatagttgaatggatctatgatagactaaaactcatcatcttacgagttttatgagtccgggaaagag |
115 |
Q |
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| T |
36292640 |
tattggacatcacatggtgagtgtctttgaaaaatagttgaatggatctatgatagactaaaactcatcatcttacgagttttatgagtccgggaaagag |
36292541 |
T |
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| Q |
116 |
aacctagttatcaaacatgattgatcagtaatatacctttgcaggagtaatgaagcctttattttcggcatcttcaatcatgctcaatgctatcctgagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292540 |
aacctagttatcaaacatgattgatcagtaatatacctttgcaggagtaatgaagcctttattttcggcatcttcaatcatgctcaatgctatcctgagt |
36292441 |
T |
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| Q |
216 |
gagaaaaacaagattatcaatacaaattcttaatttcttattaagaatcttaaaacttaacaatttcaaaacagttttagtttgtgaaataatagaattc |
315 |
Q |
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| T |
36292440 |
gcgaaaaacaagattatcaatacaaattcttaatttcttattaagaatcttaaaacttaacaatttcaaaacagttttagtttgtgaaataatagaattc |
36292341 |
T |
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| Q |
316 |
catgcct |
322 |
Q |
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||||||| |
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| T |
36292340 |
catgcct |
36292334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 36281035 - 36280879
Alignment:
| Q |
149 |
tacctttgcaggagtaatgaagcctttattttcggcatcttcaatcatgctcaatgctatcctgagtgagaaaaacaagattatcaatacaaattcttaa |
248 |
Q |
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||||||| |||||||||||| ||||||| | || |||||||||||||||||||| | |||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
36281035 |
tacctttccaggagtaatgaggcctttactctcagcatcttcaatcatgctcaacgatatcctaagtgagaaaaacaatattatcattacaaattcttaa |
36280936 |
T |
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| Q |
249 |
tttcttattaagaatcttaaaacttaacaatttcaaaacagttttagtttgtgaaat |
305 |
Q |
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||||||| ||||||||||||||| ||||||| | ||||||||| |||||||||||| |
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| T |
36280935 |
tttcttactaagaatcttaaaacctaacaatattaaaacagttcaagtttgtgaaat |
36280879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 36286537 - 36286436
Alignment:
| Q |
149 |
tacctttgcaggagtaatgaagcctttattttcggcatcttcaatcatgctcaatgctatcctgagtgagaaaaacaagattatcaatacaaattcttaa |
248 |
Q |
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||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
36286537 |
tacctttccaggagtaatgagacctttattctcagcatcttcaatcatgctcaatgctatcctgcgtgagaaaaaaaagattatcactacaaattcttaa |
36286438 |
T |
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| Q |
249 |
tt |
250 |
Q |
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|| |
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| T |
36286437 |
tt |
36286436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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