View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_high_11 (Length: 479)
Name: NF14323_high_11
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Original strand, 33275278 - 33275725
Alignment:
| Q |
15 |
aatatcacttttatccaaaatatatcatataggaatgatttatcccttaacacttccatggccaacatgtgatcaatgccaagaacatgagtactcattg |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33275278 |
aatatcacttttatccaaactatatcatataggaatgatttatcccttaacacttccatgcccaacatgtgatcaatgccaagaacatgagtactcattg |
33275377 |
T |
|
| Q |
115 |
tccatatctagcttccatttccagatgtcagccacaccattcagcaagaaaatgctagacaacgaaagactagactcccacacatgttcctcctcccaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33275378 |
tccatatctagcttccatttccagatgtcagccacaccattcagcaagaaaatgctagacaacgagagactagactcccacacatgttcctcctcccaaa |
33275477 |
T |
|
| Q |
215 |
ctaacaacatcccccgccacttccacccatcttcctatgtgccccaagctaaaacacaaatctcagccaccatcgtaaacttgtttttcgcaaagtcaaa |
314 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33275478 |
ctaacaacctcccccgccactttcacccatcttcccatgtgccccaagctaaaacacatatctcagccaccatcgtaaacttgtttttcgcaaagtcaaa |
33275577 |
T |
|
| Q |
315 |
tatttcctaaatatgaaatattgttttcattatttttgaaaatgcactcttcctaacttgttttatgatttaccactacaagagtcttcaattttggtag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33275578 |
tatttcctaaatatgaaatattgttttcattatttttgaaaatgcattcttcctaacttgttttatgatttaccactacaagagtcttcaattttggtag |
33275677 |
T |
|
| Q |
415 |
aaatcataaaaattggaagtgttctacgaaatcattgtggcatattat |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33275678 |
aaatcataaaaattggaagtgttctacgaaatcattgtggcatattat |
33275725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 1257899 - 1257855
Alignment:
| Q |
330 |
aaatattgttttcattatttttgaaaatgcactcttcctaacttg |
374 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
1257899 |
aaattttgttttgattattttttaaaatgcattcttcctaacttg |
1257855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 39785126 - 39785090
Alignment:
| Q |
330 |
aaatattgttttcattatttttgaaaatgcactcttc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39785126 |
aaatattgttttcattatttttgaaaattcattcttc |
39785090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 50762801 - 50762865
Alignment:
| Q |
17 |
tatcacttttatccaaaatatatcatataggaatgatttatcccttaacacttccatggccaaca |
81 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||| ||||| || ||| ||||||| |||||| |
|
|
| T |
50762801 |
tatcacttttatccaaacaatatcatagaggattgatctatcctttgacatttccatgaccaaca |
50762865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University