View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14323_high_2 (Length: 672)

Name: NF14323_high_2
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14323_high_2
NF14323_high_2
[»] chr2 (18 HSPs)
chr2 (1-656)||(37519387-37520066)
chr2 (1-542)||(14845581-14846112)
chr2 (593-656)||(14846205-14846268)
chr2 (541-601)||(14846136-14846196)
chr2 (287-344)||(31915043-31915101)
chr2 (260-350)||(168715-168805)
chr2 (260-440)||(31598008-31598177)
chr2 (190-248)||(2579068-2579126)
chr2 (260-352)||(2396658-2396751)
chr2 (393-444)||(30554501-30554552)
chr2 (381-446)||(31915127-31915190)
chr2 (260-321)||(8793890-8793951)
chr2 (207-248)||(9411000-9411041)
chr2 (284-336)||(31921302-31921355)
chr2 (289-352)||(12800833-12800896)
chr2 (203-231)||(25053071-25053099)
chr2 (289-352)||(38373335-38373399)
chr2 (355-417)||(38373390-38373451)
[»] chr7 (8 HSPs)
chr7 (258-352)||(23070188-23070283)
chr7 (285-352)||(40019469-40019537)
chr7 (260-352)||(31860254-31860347)
chr7 (260-337)||(11907256-11907334)
chr7 (258-352)||(3338425-3338520)
chr7 (262-352)||(25240325-25240416)
chr7 (278-336)||(46302898-46302957)
chr7 (260-336)||(2256394-2256471)
[»] chr8 (10 HSPs)
chr8 (260-347)||(27982365-27982453)
chr8 (260-347)||(28039667-28039755)
chr8 (262-347)||(41168600-41168686)
chr8 (260-352)||(22488851-22488944)
chr8 (355-446)||(31505501-31505590)
chr8 (190-248)||(32535469-32535528)
chr8 (206-242)||(3235999-3236035)
chr8 (290-352)||(44167166-44167229)
chr8 (210-248)||(20692883-20692921)
chr8 (390-443)||(29374601-29374654)
[»] chr5 (10 HSPs)
chr5 (260-352)||(30251924-30252017)
chr5 (260-352)||(7736350-7736443)
chr5 (289-352)||(42641164-42641228)
chr5 (209-248)||(13762195-13762234)
chr5 (260-352)||(35626637-35626730)
chr5 (260-343)||(31112390-31112474)
chr5 (260-352)||(1637947-1638040)
chr5 (204-233)||(2629749-2629778)
chr5 (355-446)||(25731186-25731276)
chr5 (209-245)||(37993618-37993654)
[»] chr1 (11 HSPs)
chr1 (260-352)||(44603678-44603771)
chr1 (260-352)||(12188684-12188777)
chr1 (260-352)||(4448980-4449074)
chr1 (285-333)||(42724002-42724051)
chr1 (209-248)||(9922202-9922241)
chr1 (209-248)||(16469246-16469285)
chr1 (260-352)||(2193239-2193332)
chr1 (260-352)||(26701499-26701592)
chr1 (190-237)||(6108850-6108898)
chr1 (260-296)||(32267960-32267996)
chr1 (203-248)||(40158563-40158610)
[»] chr4 (16 HSPs)
chr4 (260-352)||(37626767-37626860)
chr4 (260-446)||(53654263-53654437)
chr4 (266-336)||(41259980-41260051)
chr4 (260-352)||(11086322-11086415)
chr4 (262-329)||(16502386-16502454)
chr4 (262-352)||(41163089-41163180)
chr4 (260-352)||(48497466-48497554)
chr4 (262-352)||(33395384-33395475)
chr4 (262-346)||(2392558-2392643)
chr4 (291-347)||(14124256-14124313)
chr4 (209-242)||(19470159-19470192)
chr4 (207-248)||(23149866-23149907)
chr4 (288-352)||(37858254-37858319)
chr4 (207-248)||(50744795-50744836)
chr4 (260-324)||(37645303-37645367)
chr4 (285-352)||(52837942-52838010)
[»] chr3 (13 HSPs)
chr3 (260-352)||(54153919-54154012)
chr3 (262-352)||(44765246-44765337)
chr3 (262-324)||(32375193-32375255)
chr3 (275-352)||(42005398-42005476)
chr3 (258-337)||(4195299-4195379)
chr3 (260-352)||(47510796-47510889)
chr3 (180-248)||(34881068-34881135)
chr3 (180-248)||(34881343-34881410)
chr3 (278-352)||(3432661-3432736)
chr3 (203-242)||(51996239-51996278)
chr3 (190-249)||(54258430-54258488)
chr3 (258-296)||(48314693-48314731)
chr3 (207-248)||(20494016-20494057)
[»] chr6 (4 HSPs)
chr6 (266-324)||(2839077-2839135)
chr6 (355-417)||(6454543-6454603)
chr6 (258-336)||(27673649-27673728)
chr6 (260-352)||(29694354-29694447)
[»] scaffold0042 (1 HSPs)
scaffold0042 (260-352)||(83508-83601)
[»] scaffold0204 (1 HSPs)
scaffold0204 (258-296)||(15335-15373)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Original strand, 37519387 - 37520066
Alignment:
Q  1 gagtctaatatctcattattaacaaatcaaattaatagtaatttcagacaacaaaattagtaattatctttccatttccatgtaaccaaacatgaactta 100  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||| || ||||||  |||      |||| ||||||||| ||||    
T  37519387 gagtctaatatctcattattaacaaataaaattaatacaaatttcagaaaacaaaattagaaaatatcttctcat------gtaaacaaacatgacctta 37519480  T
Q  101 gttcgtaatttttgtctccactcctattagtttctgggtagacaaaggaggatttgacagctcaactgatttgaacttgaagttcagaattcaagtcctg 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  37519481 attcgtaatttttgtctccactcctattagtttctgggtagacaaaggaggattggacagctcaactgatttgaacttgaagttcagaatccaagtcctg 37519580  T
Q  201 ataaagagaaaaactaacataacaattaacatattaatatttgtcattt-nnnnnnnngatcttgctaaccagtgctctaaggataatggttaaggattc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||| ||||| ||||||| |||||||||||||||    
T  37519581 ataaagagaaaaactaacataacaattaacatattaatatttgtcatttaaaaaaaagggtcttgctaactagtgccctaaggacaatggttaaggattc 37519680  T
Q  300 cattaatataaactttgtcttgaaatacaagtctttacctttttcttaacaattctcttaacaataattaaacaattttttatgcaaacttttacttatt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  37519681 cattaatataaactttgtcttgaaatacaagtctttacctttttcttaacaattttcttaacaataattaaaccattttttatgcaaacttttacttatt 37519780  T
Q  400 ttaatattttaaccaatgactcaatgacaatagttagcattctccttnnnnnnnnntacttataggtagacattactcattcaatcactcaatctaaaaa 499  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||          ||||||||||||||||| |||||||||||||||||||||||||    
T  37519781 ttaatactttaaccaatgactcaagggcaatggttagcattctccttaaaaaaac--acttataggtagacattgctcattcaatcactcaatctaaaaa 37519878  T
Q  500 ctttaaaatattttcattctctagatattgttcaactcgct--------------ttcaaatatacaccactttactttcaaatcatttgataaaaaatt 585  Q
    |||||||||||||||||||||||||||||||||||||||||              ||||||| || ||||||||||||||||||||||||||||||||||    
T  37519879 ctttaaaatattttcattctctagatattgttcaactcgcttttaaataaatgtattcaaatgtaaaccactttactttcaaatcatttgataaaaaatt 37519978  T
Q  586 ctacaga-----------------atcaattcagaaccaagcgtacacaaaagaacctcacaagctaatgttttttccatggttcagt 656  Q
    ||| |||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37519979 ctatagaatcaattcattattttgatcaattcagaaccaagcgtacacaaaagaacctcacaagctaatgttttttccatggttcagt 37520066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 14845581 - 14846112
Alignment:
Q  1 gagtctaatatctcattattaacaaatcaaattaatagtaatttcagacaacaaaattagtaattatctttccatttccatgtaaccaaacatgaactta 100  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||| || ||||||  ||||       || ||||||||| ||||    
T  14845581 gagtctaatatctcattattaacaaataaaattaatacaaatttcagaaaacaaaattagaaaatatcttctcatt-------aaacaaacatgacctta 14845673  T
Q  101 gttcgtaatttttgtctccactcctattagtttctgggtagacaaaggagga--tttgacagctcaactgatttgaacttgaagttcagaattcaagtcc 198  Q
     |||||||||||||||||||||   |||||||| ||| || |||||||| ||  || |||||| |||||||||||||||||||||||| |||||||||||    
T  14845674 attcgtaatttttgtctccactttcattagtttttggatacacaaaggaagaagttggacagcacaactgatttgaacttgaagttcaaaattcaagtcc 14845773  T
Q  199 tgataaagagaaaaactaacataacaattaacatattaatatttgtcatttnnnnnnnnga-tcttgctaaccagtgctctaaggataatggttaaggat 297  Q
     |||||| || |||  |||||||||||||||||||||||||||||||||||        || ||||  ||||||||||||||| || ||||||||| |||    
T  14845774 agataaa-aggaaagttaacataacaattaacatattaatatttgtcatttaaaaataagaatcttattaaccagtgctctaaagaaaatggttaaagat 14845872  T
Q  298 tccattaatataaactttgtcttgaaatacaagtctttacctttttcttaacaattctcttaacaataattaaacaattttttatgcaaacttttactta 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||   |||||||||| ||||  |||||||    
T  14845873 tccattaatataaattttgtcttgaaatacaagtctttacctttttcttaacaatttttttaacaataattaagtcattttttatgtaaac--ttactta 14845970  T
Q  398 ttttaatattttaaccaatgactcaatgacaatagttagcattctccttnnnnnnnnntacttataggtagacattactcattcaatcactcaatctaaa 497  Q
    |||||||| ||||||||||||||||| | |||| |||||||||||||||          ||||||||||||||||| |||||||||||||| ||||||||    
T  14845971 ttttaatactttaaccaatgactcaagggcaatggttagcattctccttaaaaaaa---acttataggtagacattgctcattcaatcacttaatctaaa 14846067  T
Q  498 aactttaaaatattttcattctctagatattgttcaactcgcttt 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14846068 aactttaaaatattttcattctctagatattgttcaactcgcttt 14846112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 593 - 656
Target Start/End: Original strand, 14846205 - 14846268
Alignment:
Q  593 atcaattcagaaccaagcgtacacaaaagaacctcacaagctaatgttttttccatggttcagt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14846205 atcaattcagaaccaagcgtacacaaaagaacctcacaagctaatgtttttaccatggttcagt 14846268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 541 - 601
Target Start/End: Original strand, 14846136 - 14846196
Alignment:
Q  541 ttcaaatatacaccactttactttcaaatcatttgataaaaaattctacagaatcaattca 601  Q
    ||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  14846136 ttcaaatgtaaacgactttactttcaaatcatttgatcaaaaattctacagaatcaattca 14846196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 31915043 - 31915101
Alignment:
Q  287 tggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttc 344  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  31915043 tggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttacttttttc 31915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 168805 - 168715
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaaca 350  Q
    |||||||||| ||||| ||||||  |||| |||||||||||||||||| ||| ||| |||| ||||||||| ||||||| ||||||||||||    
T  168805 tcttgctaacaagtgccctaagggcaatg-ttaaggattccattaatagaaattttatcttagaaatacaaatctttacttttttcttaaca 168715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 440
Target Start/End: Original strand, 31598008 - 31598177
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaattctctt 358  Q
    ||||||||| || | | ||||||| ||| ||||||||||||||||||| |||||||||||| ||||| ||| ||||||| |||          || ||||    
T  31598008 tcttgctaatcaataccctaaggacaatagttaaggattccattaatagaaactttgtcttggaaattcaaatctttactttt----------ttttctt 31598097  T
Q  359 aacaataattaaacaattttttatgcaaacttttacttattttaatattttaaccaatgactcaatgacaatagttagcatt 440  Q
    | ||||||||| || | |||  ||||||||  |||||||||||| |||||||||||||| ||||| |||||| |||| ||||    
T  31598098 agcaataattataccactttcgatgcaaac--ttacttattttagtattttaaccaatgtctcaaggacaattgttaacatt 31598177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 2579068 - 2579126
Alignment:
Q  190 ttcaagtcctgataaagagaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||    
T  2579068 ttcaagtcttgataaagagaaaaactaacataacaattagcatactaacatttatcatt 2579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 2396658 - 2396751
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||  || |||||||||| || || |||||||||||||||||| |||||||||||| || ||| || ||||||| |||||||| |||||    
T  2396658 tcttgctagtcactgctctaagggtactgattaaggattccattaataaaaactttgtcttggagatataaatctttacttttttcttgacaat 2396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 30554552 - 30554501
Alignment:
Q  393 acttattttaatattttaaccaatgactcaatgacaatagttagcattctcc 444  Q
    ||||||||||||||||||||||||||| ||| |||| |  ||||||||||||    
T  30554552 acttattttaatattttaaccaatgacccaaagacactcattagcattctcc 30554501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 31915127 - 31915190
Alignment:
Q  381 atgcaaacttttacttattttaatattttaaccaatgactcaatgacaatagttagcattctcctt 446  Q
    ||||||||||  ||||||||||||| ||||||||||| | ||| |||||| |||| ||||||||||    
T  31915127 atgcaaactt--acttattttaatactttaaccaatgccccaaggacaatggttaccattctcctt 31915190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 8793951 - 8793890
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg 321  Q
    |||||||||||||||| ||||||  | |||||||||| || | ||||| |||||||||||||    
T  8793951 tcttgctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttg 8793890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 9411041 - 9411000
Alignment:
Q  207 agaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||| ||| ||||||||||||||||||||||| |||||    
T  9411041 agaaaaaccaacgtaacaattaacatattaatatttatcatt 9411000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 31921355 - 31921302
Alignment:
Q  284 taatggttaaggattccattaatataaactttgtcttg-aaatacaagtcttta 336  Q
    |||||||||| ||| ||||||||| ||||||||||||| |||||||||| ||||    
T  31921355 taatggttaatgatcccattaatagaaactttgtcttgaaaatacaagtattta 31921302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 12800896 - 12800833
Alignment:
Q  289 gttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||| ||||||||||||| ||||||||||||| ||||| || | ||||| ||||||||||||||    
T  12800896 gttaatgattccattaatagaaactttgtcttgaaaatataaat-tttacttttttcttaacaat 12800833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 25053099 - 25053071
Alignment:
Q  203 aaagagaaaaactaacataacaattaaca 231  Q
    |||||||||||||||||||||||||||||    
T  25053099 aaagagaaaaactaacataacaattaaca 25053071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 38373335 - 38373399
Alignment:
Q  289 gttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||| ||||||||||||| ||||||| |||| ||||||||||| ||||| ||| ||||| ||||    
T  38373335 gttaatgattccattaatagaaactttatcttggaaatacaagtttttacttttatcttagcaat 38373399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 38373390 - 38373451
Alignment:
Q  355 tcttaacaataattaaacaatttttt-atgcaaacttttacttattttaatattttaaccaatg 417  Q
    ||||| ||||||||| || ||||||  |||||||  ||||||||||||||||||||||||||||    
T  38373390 tcttagcaataattacaccatttttcgatgcaaa--tttacttattttaatattttaaccaatg 38373451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 23070188 - 23070283
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||    
T  23070188 gatcttgctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaat 23070283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 40019469 - 40019537
Alignment:
Q  285 aatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||    
T  40019469 aatggttaaggattccattaataaaaactttgtcttggaaatacaagtctttacttttttcttagcaat 40019537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 31860254 - 31860347
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| ||||||  ||||||||| ||||| | ||||  |||||||||||| ||||||||||||||||| || |||||| ||||    
T  31860254 tcttgctaaccagtgccctaagggcaatggttaaagattctaataatgaaaactttgtcttggaaatacaagtctttactttcttcttatcaat 31860347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 11907256 - 11907334
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttac 337  Q
    |||||||||||||||||||   |  ||||||||||||||||||||||| ||| ||||| || |||||||||||||||||    
T  11907256 tcttgctaaccagtgctctggaggcaatggttaaggattccattaatagaaaatttgttttagaaatacaagtctttac 11907334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 3338425 - 3338520
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||| ||||||  |||| |||||| |||| |||||||||||||||||| |||| |||||||| |||||||| | ||||| ||| ||||| ||||    
T  3338425 gatcttactaaccgatgctttaaggacaatgattaaggattccattaataaaaacattgtcttgaaaatacaaatttttacttttgtcttagcaat 3338520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 352
Target Start/End: Complemental strand, 25240416 - 25240325
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||  ||||||| |||||||||| |||| ||||||| ||| |||||||| |||| |||| ||||||  ||||||||| ||||    
T  25240416 ttgctaaccagtgtcctaaggacaatggttaagaattctattaatagaaattttgtcttggaaaaacaaatctttatttttttcttatcaat 25240325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 46302957 - 46302898
Alignment:
Q  278 taaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtcttta 336  Q
    ||||| |||||||||||||||||||||||| |||  ||||||| ||||||||||||||||    
T  46302957 taagggtaatggttaaggattccattaatagaaatattgtcttggaaatacaagtcttta 46302898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 2256394 - 2256471
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtcttta 336  Q
    ||||| ||| ||||||  ||||| ||||| |||||||||||||||||| ||||| |||||| ||||| ||||| ||||    
T  2256394 tcttgttaaacagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtattta 2256471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 27982453 - 27982365
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttctta 347  Q
    |||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  27982453 tcttgctaaccagtgccctaagggcaatgattaaggattccattaatagaaactttgtcttggaaatacaagtctttacttttttctta 27982365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 28039755 - 28039667
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttctta 347  Q
    |||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  28039755 tcttgctaaccagtgccctaagggcaatgattaaggattccattaatagaaactttgtcttggaaatacaagtctttacttttttctta 28039667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 41168600 - 41168686
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttctta 347  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||| |||||    
T  41168600 ttgctaaccagtgttctaaagataatggttaaggattccattaataaaaacattgtcttggaaatacaagtctttacttttgtctta 41168686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 22488944 - 22488851
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| || ||||||||||| || || ||||||||| ||||    
T  22488944 tcttgctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaat 22488851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 31505590 - 31505501
Alignment:
Q  355 tcttaacaataattaaacaattttttatgcaaacttttacttattttaatattttaaccaatgactcaatgacaatagttagcattctcctt 446  Q
    ||||||||||||||| |  |||||| || ||||  |||||||||||||||| ||||||||||| || || |||||| |||||||||||||||    
T  31505590 tcttaacaataattacattatttttaatacaaa--tttacttattttaatactttaaccaatgccttaaagacaattgttagcattctcctt 31505501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 32535469 - 32535528
Alignment:
Q  190 ttcaagtcctgataaagagaaaaa-ctaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||| ||| || |||||||| |||||||||||||||||||||||| ||||||||||    
T  32535469 ttcaagtcttgacaaggagaaaaagctaacataacaattaacatattaacatttgtcatt 32535528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 3236035 - 3235999
Alignment:
Q  206 gagaaaaactaacataacaattaacatattaatattt 242  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3236035 gagaaaatctaacataacaattaacatattaatattt 3235999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 44167166 - 44167229
Alignment:
Q  290 ttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||| ||||| ||||||| |||||||||||| ||||||||| ||||||| ||||||||| ||||    
T  44167166 ttaatgattctattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaat 44167229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 20692883 - 20692921
Alignment:
Q  210 aaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  20692883 aaaactaacataacaattaacatattaacatttgccatt 20692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 29374601 - 29374654
Alignment:
Q  390 tttacttattttaatattttaaccaatgactcaatgacaatagttagcattctc 443  Q
    ||||||||||||| || ||||||||||| ||||| || ||| ||||||||||||    
T  29374601 tttacttattttactactttaaccaatgtctcaaggataatggttagcattctc 29374654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 30251924 - 30252017
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||| |||||||||| ||||||  ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  30251924 tcttggtaaccagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaat 30252017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 7736443 - 7736350
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| ||||||  ||||||||| ||| ||||||||| ||||||| ||||| |||||||||||||||  ||||||||| ||||    
T  7736443 tcttgctaaccagtgccctaagggcaatggttaaagatcccattaatagaaactttatcttgaaaatacaagtctttaattttttcttagcaat 7736350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 42641228 - 42641164
Alignment:
Q  289 gttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||    
T  42641228 gttaaggattctattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaat 42641164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 13762234 - 13762195
Alignment:
Q  209 aaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13762234 aaaaactaacataacaattaacatattaatatttgtcatt 13762195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 35626730 - 35626637
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| ||||| ||| ||||| |||| ||||| ||| ||||| ||||    
T  35626730 tcttgctaactagtgccctaaggacaatggttaaggaatccattaatagaaattttgttttgaaaatataagtttttacttttgtcttaccaat 35626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 31112390 - 31112474
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttaccttttt 343  Q
    |||||||||||||||| ||||||  ||||||||| ||||||||||||| |||  |||||||  ||||||||| |||||| |||||    
T  31112390 tcttgctaaccagtgccctaagggcaatggttaatgattccattaatagaaatattgtcttaaaaatacaaggctttacattttt 31112474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 1637947 - 1638040
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||||||||    |||||  ||||||||| ||||| ||||||||||| |||||||| ||||||||| | ||||| ||||||||| ||||    
T  1637947 tcttgctaaccagtatcttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaat 1638040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 2629778 - 2629749
Alignment:
Q  204 aagagaaaaactaacataacaattaacata 233  Q
    ||||||||||||||||||||||||||||||    
T  2629778 aagagaaaaactaacataacaattaacata 2629749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 25731276 - 25731186
Alignment:
Q  355 tcttaacaataattaaacaattttt-tatgcaaacttttacttattttaatattttaaccaatgactcaatgacaatagttagcattctcctt 446  Q
    ||||| ||||||||| |||| |||| |||||||||||  |||||||||| || ||||||||||| |  || | |||| |||||||||||||||    
T  25731276 tcttagcaataattacacaacttttctatgcaaactt--acttattttagtactttaaccaatgcccaaaaggcaatggttagcattctcctt 25731186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 37993618 - 37993654
Alignment:
Q  209 aaaaactaacataacaattaacatattaatatttgtc 245  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  37993618 aaaaactaacataacaattaacatactaacatttgtc 37993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 44603771 - 44603678
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttgaaa-tacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||||    
T  44603771 tcttgctaaccagtgccctaagggcaatggttaaggatcccattaatataaactttgtcttgaaagtacaaatctttatttttttcttagcaat 44603678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 12188777 - 12188684
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||  ||||| |||||   ||| ||||||||||||||||||| |||||||||||| ||||||||| | ||||| ||||||||| ||||    
T  12188777 tcttgctaattagtgccctaagagcaatcgttaaggattccattaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaat 12188684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 4448980 - 4449074
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaac-tttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||| ||  ||||||  ||||||||||||||||||||| | |||| |||||||| ||||||||||| || |  ||||||||||||||    
T  4448980 tcttgctaaccaatgtcctaagggcaatggttaaggattccattaacagaaacttttgtcttagaaatacaagttttaatttttttcttaacaat 4449074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 42724051 - 42724002
Alignment:
Q  285 aatggttaaggattccattaatataaactttgtc-ttgaaatacaagtct 333  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  42724051 aatggttaaggattccattaatagaaactttgtctttgaaatacacgtct 42724002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 9922202 - 9922241
Alignment:
Q  209 aaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  9922202 aaaaactaacataacaattaacatactaacatttgtcatt 9922241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 16469246 - 16469285
Alignment:
Q  209 aaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  16469246 aaaaactaacataacaattaacctactaatatttgtcatt 16469285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 2193239 - 2193332
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||| ||| || ||| ||||| | ||| ||||||||||| ||||||| ||||||| ||||| ||||| || ||||||| ||||||||| ||||    
T  2193239 tcttgttaatcaatgccctaagaacaatagttaaggattctattaatagaaactttatcttgaaaatataaatctttacttttttcttatcaat 2193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 26701499 - 26701592
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||| ||  ||||||  |||||||||  ||  |||||||| ||||||| ||||| |||||||| ||||||| ||||||||| ||||    
T  26701499 tcttgctaaccattgtcctaagggcaatggttaaaaatctcattaatagaaactttctcttgaaaatacaaatctttacttttttcttatcaat 26701592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 6108898 - 6108850
Alignment:
Q  190 ttcaagtcctgataaagagaaaaa-ctaacataacaattaacatattaa 237  Q
    ||||||| |||| ||||||||||| ||||||||| ||||||||||||||    
T  6108898 ttcaagttctgacaaagagaaaaaactaacataataattaacatattaa 6108850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 32267960 - 32267996
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaagga 296  Q
    |||||||||||||||| || |||||||||||||||||    
T  32267960 tcttgctaaccagtgccctcaggataatggttaagga 32267996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 40158563 - 40158610
Alignment:
Q  203 aaagagaaaaa--ctaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||||||  ||||||||||| |||||||||||| ||||||||||    
T  40158563 aaagagaaaaatactaacataacagttaacatattaacatttgtcatt 40158610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 37626860 - 37626767
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||| ||||  || |||  |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  37626860 tcttgctaactagtgtcctgagggcaatggttaaggatttcattaatataaactttgtcttggaaatacaagtctttacttttttcttatcaat 37626767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 260 - 446
Target Start/End: Complemental strand, 53654437 - 53654263
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaattctctt 358  Q
    |||||| |||||||| | ||||||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||||| ||||            ||||    
T  53654437 tcttgcaaaccagtgttataaggataatggttaaaaattccataaatagaaactttgtcttgtaaatacaagtctttacttttt------------tctt 53654350  T
Q  359 aacaataattaaacaattttt-tatgcaaacttttacttattttaatattttaaccaatgactcaatgacaatagttagcattctcctt 446  Q
      ||||||||| || ||||||  ||||||||   |||||||||||||| |||||||||||||  ||||||||| |||||||||||||||    
T  53654349 cgcaataattacaccatttttcgatgcaaac--atacttattttaatactttaaccaatgacctaatgacaatggttagcattctcctt 53654263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 41259980 - 41260051
Alignment:
Q  266 taaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtcttta 336  Q
    |||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  41259980 taaccagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtcttta 41260051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 11086415 - 11086322
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| ||||||  |||||||||||||| ||||||||  |||||| |||| ||||||||| ||||||| ||||||||| ||||    
T  11086415 tcttgctaaccagtgccctaagggcaatggttaaggatttcattaataggaactttatcttggaaatacaaatctttacttttttcttagcaat 11086322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 16502386 - 16502454
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaa 329  Q
    |||||||||||||| ||||||  |||||||||||| ||||||| || |||||||||||| |||||||||    
T  16502386 ttgctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaa 16502454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 352
Target Start/End: Complemental strand, 41163180 - 41163089
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||| |||| || |||||||||  |||| ||||||| |||  ||||||| ||||||||||| ||||| ||||||||| ||||    
T  41163180 ttgctaaccagtgccctaaagacaatggttaaacattctattaataaaaatgttgtcttagaaatacaagtatttacttttttcttagcaat 41163089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 48497554 - 48497466
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||| ||||||||  |||||||| |||||||||     ||||||||| ||||||||||||| |||||||||||||||  ||||||||| ||||    
T  48497554 tcttgttaaccagtagtctaaggacaatggttaa-----ccattaataaaaactttgtcttgaaaatacaagtctttatttttttcttatcaat 48497466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 352
Target Start/End: Complemental strand, 33395475 - 33395384
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||||| ||| || ||||||  ||||||||| ||||||| ||||  ||||||| ||||| |||||||||||||||| | ||||||| ||||    
T  33395475 ttgctaatcagggccctaagggcaatggttaatgattccaataatggaaactttatcttggaaatacaagtctttacttatttcttagcaat 33395384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 2392558 - 2392643
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttctt 346  Q
    |||||||||||||| |||||   | |||||||||| ||||||| || ||||||||||||| |||| ||||| ||||| ||| ||||    
T  2392558 ttgctaaccagtgccctaagagcattggttaaggaatccattagtagaaactttgtcttgtaaatgcaagtttttacttttgtctt 2392643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 14124313 - 14124256
Alignment:
Q  291 taaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttctta 347  Q
    ||||||||||||||||| ||||||||| || |||||| |||| ||||| |||||||||    
T  14124313 taaggattccattaatagaaactttgttttggaaatataagtttttacttttttctta 14124256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 19470192 - 19470159
Alignment:
Q  209 aaaaactaacataacaattaacatattaatattt 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  19470192 aaaaattaacataacaattaacatattaatattt 19470159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 23149907 - 23149866
Alignment:
Q  207 agaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||    
T  23149907 agaaaaaataacataacaattaacatactaacatttgtcatt 23149866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 37858319 - 37858254
Alignment:
Q  288 ggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||  ||||||| ||||||| ||||| |||||||||| ||||| ||||||||| ||||    
T  37858319 ggttaaggatttgattaatagaaactttatcttgaaaatacaagtttttacttttttcttagcaat 37858254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 50744795 - 50744836
Alignment:
Q  207 agaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    ||||||||||||||||||||||||||  ||| ||||||||||    
T  50744795 agaaaaactaacataacaattaacatgctaacatttgtcatt 50744836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 37645303 - 37645367
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttgaaa 324  Q
    ||||| |||| |||||  ||| |||| |||||||||| ||||||||||||||  |||||||||||    
T  37645303 tcttgttaacgagtgccttaaagatattggttaaggaatccattaatataaatattgtcttgaaa 37645367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 52837942 - 52838010
Alignment:
Q  285 aatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||| |||| |||||||| |||| || | ||| ||||||| |||||||| ||||||||||||||    
T  52837942 aatggttaaagatttcattaatagaaacattattttggaaatacatgtctttacttttttcttaacaat 52838010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 54154012 - 54153919
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtc-ttgaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| ||||||  | ||||||| ||||||||||||| |||||||||| | ||||||||||||||||| ||||||||| ||||    
T  54154012 tcttgctaaccagtgccctaagggcagtggttaaagattccattaataaaaactttgtcatggaaatacaagtctttacttttttcttatcaat 54153919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 352
Target Start/End: Original strand, 44765246 - 44765337
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||| ||||||  | ||||||||||||||| ||||  ||||||||| || ||||||||||||||||| | ||||||| ||||    
T  44765246 ttgctaaccagtgccctaagggcagtggttaaggattccaataatggaaactttgttttggaaatacaagtctttacttatttcttagcaat 44765337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 32375193 - 32375255
Alignment:
Q  262 ttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttgaaa 324  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||  || ||||||||||||    
T  32375193 ttgctaaccagtgccctaagggcaatggttaaggattccattaataagaattttgtcttgaaa 32375255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 42005476 - 42005398
Alignment:
Q  275 ctctaaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||  ||||||||||||||||||||||| ||| ||| | ||| |||||||| ||||||| ||||||||||||||    
T  42005476 ctctaagggcaatggttaaggattccattaatagaaattttatattgaaaatacaaatctttacttttttcttaacaat 42005398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 4195299 - 4195379
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttac 337  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||||||  || ||||| || ||||||||| |||||||    
T  4195299 gatcttgctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttac 4195379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 47510889 - 47510796
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||||||||| |||| |  |||| || | ||||||||||||| ||||| |||||| ||||||||| |||||   ||||||||||||||    
T  47510889 tcttgctaaccagtgccctaaaggcaatgattgatgattccattaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaat 47510796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 34881068 - 34881135
Alignment:
Q  180 aagttcagaattcaagtcctgataaagagaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||| |||| |||||||||||  || ||||||| |||||| ||||||||||||||||| ||||||||||    
T  34881068 aagtccagagttcaagtcctggcaaggagaaaa-ctaacaaaacaattaacatattaacatttgtcatt 34881135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 34881343 - 34881410
Alignment:
Q  180 aagttcagaattcaagtcctgataaagagaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||| |||| |||||||||||  || ||||||| |||||| ||||||||||||||||| ||||||||||    
T  34881343 aagtccagagttcaagtcctggcaaggagaaaa-ctaacaaaacaattaacatattaacatttgtcatt 34881410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 3432736 - 3432661
Alignment:
Q  278 taaggataatggttaaggattccattaatataaactttgtcttg-aaatacaagtctttacctttttcttaacaat 352  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||||| ||||| |||| ||||| || |||||| ||||    
T  3432736 taaggacaatggttaatgattccattaatagaaactttatcttgaaaatataagtgtttactttgttcttagcaat 3432661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 51996239 - 51996278
Alignment:
Q  203 aaagagaaaaactaacataacaattaacatattaatattt 242  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  51996239 aaagagtaaaactaacataacaattaacatactaatattt 51996278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 54258430 - 54258488
Alignment:
Q  190 ttcaagtcctgataaagagaaaaactaacataacaattaacatattaatatttgtcattt 249  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| ||| ||||| |||||    
T  54258430 ttcaagtcctgttaaggagaaaa-ctaacataacaattaacatactaacatttgccattt 54258488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 48314731 - 48314693
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaagga 296  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  48314731 gatcttgctaaccagtgctctaagggcaatggttaagga 48314693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 20494016 - 20494057
Alignment:
Q  207 agaaaaactaacataacaattaacatattaatatttgtcatt 248  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  20494016 agaaaaactaacataataattaacatactaacatttgtcatt 20494057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 2839135 - 2839077
Alignment:
Q  266 taaccagtgctctaaggataatggttaaggattccattaatataaactttgtcttgaaa 324  Q
    |||||||||||||||||| | |||||||||| ||||||| || ||||||||||||||||    
T  2839135 taaccagtgctctaaggacattggttaaggaatccattagtagaaactttgtcttgaaa 2839077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 6454603 - 6454543
Alignment:
Q  355 tcttaacaataattaaacaattttttatgcaaacttttacttattttaatattttaaccaatg 417  Q
    ||||||||||||||| |||| |||  ||||||||||  |||||||||| ||||||||||||||    
T  6454603 tcttaacaataattacacaactttcgatgcaaactt--acttattttagtattttaaccaatg 6454543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 27673649 - 27673728
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtcttta 336  Q
    ||||||||||||| |||| ||||||  |||| |||| |||||||||| || |||  ||||||| ||||||||||||||||    
T  27673649 gatcttgctaaccggtgccctaagggcaatgattaaagattccattactagaaatgttgtcttggaaatacaagtcttta 27673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 29694447 - 29694354
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    |||||||||| ||||   |||||| ||||||||||||||| ||||||| |||  || |||| ||||||||||| ||||  ||| ||||||||||    
T  29694447 tcttgctaactagtgtcttaaggacaatggttaaggattctattaatagaaatattatcttggaaatacaagtttttatttttgtcttaacaat 29694354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 83508 - 83601
Alignment:
Q  260 tcttgctaaccagtgctctaaggataatggttaaggattccattaatataaactttgtctt-gaaatacaagtctttacctttttcttaacaat 352  Q
    ||||||||||| |||||||||||  ||||  |||||| ||| ||||||||||||||||||| |||||| || | ||||| ||| ||||| ||||    
T  83508 tcttgctaaccggtgctctaagggcaatgcataaggaatcctttaatataaactttgtcttcgaaatataaatttttacttttgtcttatcaat 83601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 15335 - 15373
Alignment:
Q  258 gatcttgctaaccagtgctctaaggataatggttaagga 296  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  15335 gatcttgctaaccagtgctctcaggataatgattaagga 15373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University