View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_21 (Length: 397)
Name: NF14323_high_21
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 36014155 - 36013969
Alignment:
| Q |
41 |
cataaccaagcataagttggtttcctatttaccaaaaaacaactatacttgttgaagtattcaaacagaaatgcctagaatacgtttcaagttaagctta |
140 |
Q |
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| T |
36014155 |
cataaccaagcataagttggtttcctatttaccaaaaaacaactatacttgttgaagtattcaaacagaaatgccttgaatacgtttcaagttaagctta |
36014056 |
T |
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| Q |
141 |
aagttacaatggtagtactagtactgtttaagtattatcctaaaataaggtaatctaaccatgtgaacaatccaattgttctaatac |
227 |
Q |
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| T |
36014055 |
aagttacaatggtagtaccagtactgtttaagtattatcctaaaataaggtaatctaaccatgtgaacaatccaattgttctaatac |
36013969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 36013916 - 36013828
Alignment:
| Q |
223 |
aatacagaatacagagatcctgaacagaacaaataaagaaaccgagagcatctgagaagaggaaaacattgcaaatgtatctctttttt |
311 |
Q |
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| T |
36013916 |
aatacagaatacagagatcctgaacaggacaaataaagaaaccgagagcatctgagaagaggaaaacattgcaaatttatctctttttt |
36013828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 14749898 - 14749833
Alignment:
| Q |
251 |
acaaataaagaaaccgagagcatctgagaagaggaaaacattgcaaatgtatctcttttttaacat |
316 |
Q |
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| T |
14749898 |
acaagtaaagaaaccaagagcatccgagaagaggaaaacattgcagatgtctttcttttttaacat |
14749833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 36013809 - 36013771
Alignment:
| Q |
311 |
taacataagatgttcacatgaccttaaaaatcattgaac |
349 |
Q |
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| T |
36013809 |
taacataagatgttcacatgaccttaaaaatcaatgaac |
36013771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 382
Target Start/End: Complemental strand, 36013741 - 36013710
Alignment:
| Q |
351 |
ttatgtataactaaggaaaagaagagtgaact |
382 |
Q |
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| T |
36013741 |
ttatgtataactaaggaaaagaagagtgaact |
36013710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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