View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_22 (Length: 388)
Name: NF14323_high_22
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 32100080 - 32099973
Alignment:
| Q |
55 |
tattaggaaacccgacagaccctctagttacctttctaacattttttctatccacaagctttcaaccattaaggagtcgaatctagtttcactcggatca |
154 |
Q |
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| T |
32100080 |
tattaggaaacccgactgaccctctagttacctttctaacattttttc-atccacaggctttcaaccattaaggagtcgaatctagtttcactcggatca |
32099982 |
T |
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| Q |
155 |
atataacaa |
163 |
Q |
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| T |
32099981 |
atataacaa |
32099973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 235 - 388
Target Start/End: Complemental strand, 32099910 - 32099753
Alignment:
| Q |
235 |
cgcagataagttatagggattgaaatatatagacttgnnnnnnncgtatttattaatttggctcgaagattatatgttgagctaannnnnnn-----cta |
329 |
Q |
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| T |
32099910 |
cgcagatatgttatagggattgaaatatatagacttgaaaaaa-cgtatttattaatttggctcgaagattatatgttgagctaattttttttctttcta |
32099812 |
T |
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| Q |
330 |
aaacaaacttataactatgggcaaatgtaatatattgttgtacaacatttgttaaggtg |
388 |
Q |
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| T |
32099811 |
aaacaaacttataactatgggcaaatgtaatatattgttgtacaacatttgttaaggtg |
32099753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 32100400 - 32100362
Alignment:
| Q |
18 |
tcaaagtatccagtgactttgactttgccaataatatta |
56 |
Q |
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| T |
32100400 |
tcaaagtatccagtgactttgactttgccaataatatta |
32100362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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