View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_23 (Length: 384)
Name: NF14323_high_23
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_23 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 36119614 - 36119874
Alignment:
| Q |
12 |
acaattagtctcaaaggtttaaattttattttgnnnnnnn-gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtccaaag |
110 |
Q |
| |
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|||||||||| | |||||||||||||||||||| |||| ||||||||| | |||||||||||||||| |||| ||||| ||||||||||| |
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| T |
36119614 |
acaattagtccctaaggtttaaattttattttgaaaggaaagatggttaaagtgtgaaagaaatattgaatcttttaatgtttatgtaatctgtccaagt |
36119713 |
T |
|
| Q |
111 |
tgtaaatatagtttaataaaaaggttctcatgtttattcaagaattcagtttattagttattgagcaatgcctgaagcaaccacaccagcaacatgttat |
210 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||| | || ||||||||| ||||||||||||||||||| |
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| T |
36119714 |
agtaaatatagtttaacaaaaaggttctcatgtttattcaagaattcagtctatcaattattgagtagtgtctgaagcaaacacaccagcaacatgttat |
36119813 |
T |
|
| Q |
211 |
attcaagtttaaattttgtattttctattataaaatgcaatctatctaaacacacatttaaa |
272 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36119814 |
att-aagtttaaattttgtattttaaattataaaatgcaatctatctaaacacacatttaaa |
36119874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 36553955 - 36553890
Alignment:
| Q |
52 |
gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtccaaagtgtaaat |
117 |
Q |
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| T |
36553955 |
gatgattaaagtgtgaaagaaaaattgaatcttttactttttatgcaatatgtccagggtgtaaat |
36553890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 36558215 - 36558280
Alignment:
| Q |
52 |
gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtccaaagtgtaaat |
117 |
Q |
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| T |
36558215 |
gatgattaaagtgtgaaagaaaaattgaatcttttactttttatgcaatatgtccagggtgtaaat |
36558280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 40565213 - 40565473
Alignment:
| Q |
12 |
acaattagtctcaaaggtttaaattttattttgnnnnnnn-gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtccaaag |
110 |
Q |
| |
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|||||||||| | |||||||||||||||||||| |||| ||||||||| | |||||||||||||||| |||| ||||| ||||||||||| |
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| T |
40565213 |
acaattagtccctaaggtttaaattttattttgaaaggaaagatggttaaagtgtgaaagaaatattgaatcttttaatgtttatgtaatctgtccaagt |
40565312 |
T |
|
| Q |
111 |
tgtaaatatagtttaataaaaaggttctcatgtttattcaagaattcagtttattagttattgagcaatgcctgaagcaaccacaccagcaacatgttat |
210 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||| | || ||||||||| ||||||||||||||||||| |
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| T |
40565313 |
agtaaatatagtttaacaaaaaggttctcatgtttattcaagaattcagtctatcaattattgagtagtgtctgaagcaaacacaccagcaacatgttat |
40565412 |
T |
|
| Q |
211 |
attcaagtttaaattttgtattttctattataaaatgcaatctatctaaacacacatttaaa |
272 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40565413 |
att-aagtttaaattttgtattttaaattataaaatgcaatctatctaaacacacatttaaa |
40565473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 34778055 - 34778226
Alignment:
| Q |
52 |
gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtccaaagtgtaaatatagtttaataaaaaggttctcatgtttattcaa |
151 |
Q |
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|||||||| ||||| | ||||| |||||||||| |||| |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
34778055 |
gatgattagagtgtgaaagaaaaattgaatcttttaatatttatacattctgtccaaggtgtaaatatagtttaacaacaaggttctcatgtttattcaa |
34778154 |
T |
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| Q |
152 |
gaattcagtttattagttattgagcaatgcctgaagcaaccacaccagcaacatgttatattcaagtttaaa |
223 |
Q |
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|||| |||| ||| | || || | | ||| | |||||||||||||||||||||||| ||||||| |||||| |
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| T |
34778155 |
gaatccagtctatcaattttttaaccgtgcttcaagcaaccacaccagcaacatgttgtattcaactttaaa |
34778226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 13787 - 13622
Alignment:
| Q |
9 |
acaacaattagtctcaaaggtttaaattttattttgnnnnnnn-gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtcca |
107 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
13787 |
acaacaattagtcccaaaggtttaaaatttattttgaaaggaaagatgattaaaatgtgaaagaaatattgaatcttctaatttttatacaatctgtcca |
13688 |
T |
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| Q |
108 |
aagtgtaaatatagtttaataaaaaggttctcatgtttattcaagaattcagtttattagttattg |
173 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
13687 |
aagtgtaaatatagtttaacaaaaaggttctcttgtttattcaagaattcagtctattagttattg |
13622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 21369262 - 21369097
Alignment:
| Q |
9 |
acaacaattagtctcaaaggtttaaattttattttgnnnnnnn-gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaatctgtcca |
107 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
21369262 |
acaacaattagtcccaaaggtttaaaatttattttgaaaggaaagatgattaaaatgtgaaagaaatattgaatcttctaatttttatacaatctgtcca |
21369163 |
T |
|
| Q |
108 |
aagtgtaaatatagtttaataaaaaggttctcatgtttattcaagaattcagtttattagttattg |
173 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
21369162 |
aagtgtaaatatagtttaacaaaaaggttctcttgtttattcaagaattcagtctattagttattg |
21369097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24212824 - 24212591
Alignment:
| Q |
1 |
aaaaatatacaacaattagtctcaaaggtttaaattttattttgnnnnnnn-gatgattaaagtgtcatagaaatattgaatcttctaatttttatacaa |
99 |
Q |
| |
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||||| ||||| ||||||||| ||| ||||| |||||||||||| |||| |||| |||| | |||||||||||||||| |||| |||||||| |
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| T |
24212824 |
aaaaaaatacatcaattagtcccaagggtttgaattttattttgaaaggaaagatggttaatgtgtgaaagaaatattgaatcttttaatgtttatacat |
24212725 |
T |
|
| Q |
100 |
tctgtccaaagtgtaaatatagtttaataaaaaggttctcatgtttattcaagaat--tcagtttattagttattgagcaatgcctgaagcaaccacacc |
197 |
Q |
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|||||| || |||||||||| ||||| |||||||||||||||||||||||||||| || | |||| ||||||| | ||| |||||||| |||||| |
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| T |
24212724 |
tctgtc-aagttgtaaatataatttaacaaaaaggttctcatgtttattcaagaattgtctatccattatatattgagtagtgcttgaagcaatcacacc |
24212626 |
T |
|
| Q |
198 |
agcaacatgttatattcaagtttaaattttgtatt |
232 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |
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| T |
24212625 |
agcaacatgttatattcaactttaaattttgtatt |
24212591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 46565537 - 46565461
Alignment:
| Q |
102 |
tgtccaaagtgtaaatatagtttaataaaaaggttctcatg-tttattcaagaattcagtttattagttattgagca |
177 |
Q |
| |
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||||||| ||||||||||| ||||| |||||||||| |||| | ||||||||||| |||||||| |||||||||| |
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| T |
46565537 |
tgtccaaggtgtaaatataatttaacaaaaaggttcgcatgatatattcaagaatgcagtttatctattattgagca |
46565461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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