View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_high_25 (Length: 376)
Name: NF14323_high_25
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 372
Target Start/End: Complemental strand, 48254536 - 48254169
Alignment:
| Q |
5 |
cagagaaagtctctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttcaaacacttat |
104 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254536 |
cagagaaagtatctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttcaaacacttat |
48254437 |
T |
|
| Q |
105 |
ctcttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgnnnnnnngtttcttacatgaaacaggtcttcaatatggtacaaaagcat |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254436 |
cttttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgtttttttgtttgttacatgaaacaggtcttcaatatggtacaaaagcat |
48254337 |
T |
|
| Q |
205 |
gttgtggatatggtggaggtgaatacaacttcgatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaacagcatgtga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254336 |
gttgtggatatggtggaggtgaatacaacttcaatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaacagcatgtga |
48254237 |
T |
|
| Q |
305 |
tgacccttacaactatgtgatttgggatgggattcttgctacagaagctccaagcaagcttataacct |
372 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
48254236 |
tgacccttacaactatgtgagttgggatgggattcatgccacagaagctgcaagcaagcttataacct |
48254169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University