View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_3 (Length: 669)
Name: NF14323_high_3
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 15374661 - 15374904
Alignment:
| Q |
15 |
aataataactttaagtcataataattagtagcgttaataggcagtcgtaacagtaatttagatatgttaatttaaactctcatgacgctttactttcaag |
114 |
Q |
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| T |
15374661 |
aataataactttaagtcataataattagtagcgttaataggtagtcgtaacagtaatttagatatgttaatttaaactcccatgatgctttactttcaag |
15374760 |
T |
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| Q |
115 |
taacaatattagtaatcaaattgaaaccatgtcgcaagcaa----tctagtcgaaatattatcaaaggggcgtggcttctatgaacgagatcatgcaaga |
210 |
Q |
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| T |
15374761 |
taacaatattagtaatcaaattgaaaccatgtcacaagcaataactctagtcgaaatattatcaaaggggtgtggcttctatgaatgagatcatgcaaga |
15374860 |
T |
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| Q |
211 |
tgtgattagaggaagcataattaactgcaacaggtttaagatgt |
254 |
Q |
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| T |
15374861 |
tgtgattagaggaagcacaattaactgcaacaggtttaagatgt |
15374904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 472 - 664
Target Start/End: Original strand, 15375214 - 15375407
Alignment:
| Q |
472 |
caaattcatgaaagaagttctctctaaagaaaggaaattgtgaatgga--agagtcaattactcaaaaagaaagaggtaatgccatctttgacagaaagg |
569 |
Q |
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| T |
15375214 |
caaattcatgaaagaagttctctctaaataaaggaaattgtgaatggaagagagtcaatttctcaaactgaaagatgtaatgccatctttggcagagagt |
15375313 |
T |
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| Q |
570 |
taccactaaagaagaaagacccaagaggcttcaaatctatcgggaaactagccattaaagaagctcgatatggtcttggagaaagcattaactct |
664 |
Q |
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| T |
15375314 |
tacctctaaagaagaaggacccaa-aagcttcaattatatcgggaagctatccataaaagaagctcgatatggtcttggagaaagcattaactct |
15375407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 15375129 - 15375169
Alignment:
| Q |
437 |
aacacgaagaattcatcaagctcatgggaaaacttcaaatt |
477 |
Q |
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| T |
15375129 |
aacacgaagaattcatcaagctcatgggaaaacttcaaatt |
15375169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 664
Target Start/End: Original strand, 13129932 - 13129996
Alignment:
| Q |
600 |
tcaaatctatcgggaaactagccattaaagaagctcgatatggtcttggagaaagcattaactct |
664 |
Q |
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| T |
13129932 |
tcaactctattgggaagctgcccataaaagaagctcgatatggtcttggtgaaagcattaactct |
13129996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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