View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_32 (Length: 330)
Name: NF14323_high_32
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 40502801 - 40502484
Alignment:
| Q |
12 |
atgaaggaatactggaatactataagtaaaacaagatgtctctaaaccaggttttgcaatcttgttagctgcaatgttgccttctcacatgacatgggaa |
111 |
Q |
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| T |
40502801 |
atgaaggaatactggaatactataagtaaaacaagatgtctctaaaccaggttttgcaatcttgttagctgcaatgttgccttctcacatgacatgggaa |
40502702 |
T |
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| Q |
112 |
atagcgatattctctatgtgatctaacatactcttgataccgacaactattttgaaatggggatgatttgacacacatctcaattgaattaacttggttg |
211 |
Q |
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| T |
40502701 |
atagagatattctctatgtgatctaacatactcttgataccaacaactattttgaaatggggatgatttgacacacatctcaattgaattaacttggttg |
40502602 |
T |
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| Q |
212 |
caatgagagaatcaaattctatcatcaccttggaatacccattttcaatgattaagttaagccatgttagggatagtccgtaatttagactccaaaaatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
40502601 |
caatgagagaatcaaattctatcatcaccttggaatacccattttcaatgattaagttaagccatgtta-ggatagtctgtaatttagactccaaaaatg |
40502503 |
T |
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| Q |
312 |
aacaagctccaatgaacgc |
330 |
Q |
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| T |
40502502 |
aacaagctccaatgaacgc |
40502484 |
T |
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