View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_33 (Length: 329)
Name: NF14323_high_33
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 143 - 292
Target Start/End: Complemental strand, 41354598 - 41354447
Alignment:
| Q |
143 |
atttccaatttgatatagctaggctcat--ctgattatgaattttacgattttatcttctaattaatatattgttgtagcaaattgccaacggaaaaaag |
240 |
Q |
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| T |
41354598 |
atttccaatttgatatagctaggctcatatctgattatgaattttacaattttatcttctatttaatatattgttgtagcaaattgccaacggaaaaaag |
41354499 |
T |
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| Q |
241 |
agaagataattttgcagcattgtgttagcatcggagattatatttttggaaa |
292 |
Q |
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| T |
41354498 |
agaagataattttgcagcattgtgttagcatcggagattatatttttagaaa |
41354447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 41355385 - 41355272
Alignment:
| Q |
30 |
agattcatgtgaatctgcaacaacttcgattggatccaaatattattattttttgaataaattggatccaagtatttgatttgccaaaagaaaatggcct |
129 |
Q |
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| T |
41355385 |
agattcatgtgaatctgcaacaacttcgattggatccaaatattattattttttgaataaattggatccaagtatttgatttgccaaaagaaaatggcct |
41355286 |
T |
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| Q |
130 |
gctatttagctata |
143 |
Q |
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|||||||||||||| |
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| T |
41355285 |
gctatttagctata |
41355272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 38332381 - 38332409
Alignment:
| Q |
290 |
aaaggattaattaagtttttggtccctat |
318 |
Q |
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| T |
38332381 |
aaaggattaattaagtttttggtccctat |
38332409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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