View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14323_high_34 (Length: 324)

Name: NF14323_high_34
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14323_high_34
NF14323_high_34
[»] chr3 (2 HSPs)
chr3 (91-300)||(16346202-16346411)
chr3 (98-147)||(16348108-16348157)
[»] chr6 (3 HSPs)
chr6 (91-297)||(20418492-20418698)
chr6 (91-283)||(20417018-20417210)
chr6 (91-283)||(20415934-20416126)
[»] scaffold0146 (1 HSPs)
scaffold0146 (91-233)||(8612-8754)
[»] scaffold0083 (1 HSPs)
scaffold0083 (91-219)||(34326-34454)
[»] chr4 (3 HSPs)
chr4 (91-246)||(15018556-15018711)
chr4 (91-169)||(19457214-19457292)
chr4 (91-169)||(19458927-19459005)
[»] chr5 (1 HSPs)
chr5 (91-249)||(29950837-29950995)
[»] chr2 (3 HSPs)
chr2 (91-246)||(22299303-22299458)
chr2 (91-169)||(24807278-24807356)
chr2 (91-169)||(23732640-23732717)
[»] chr1 (2 HSPs)
chr1 (91-169)||(22063222-22063300)
chr1 (91-197)||(20189759-20189868)
[»] scaffold1778 (1 HSPs)
scaffold1778 (91-169)||(1252-1330)
[»] chr7 (2 HSPs)
chr7 (91-189)||(21585688-21585786)
chr7 (91-169)||(40999212-40999290)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 16346411 - 16346202
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16346411 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaac 16346312  T
Q  191 ctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattatttaccta 290  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  16346311 ctttcttctttaactcatgaaggaaaccaagcaaatgaagaagttttttctcaactagtagaaaacaatcatgttctttgaaaatatgattatttcccta 16346212  T
Q  291 attcacaagg 300  Q
    ||||||||||    
T  16346211 attcacaagg 16346202  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 16348108 - 16348157
Alignment:
Q  98 aagttttggcctactattacactagtaccttcatcaaagttggtatgtgt 147  Q
    ||||||||||||||||||||| |||||||||| || || ||||| |||||    
T  16348108 aagttttggcctactattacattagtaccttcttctaaattggtttgtgt 16348157  T

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Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 91 - 297
Target Start/End: Complemental strand, 20418698 - 20418492
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20418698 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaac 20418599  T
Q  191 ctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattatttaccta 290  Q
    |||||||||  |||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||    
T  20418598 ctttcttcttcaactcatgaaagaaaccaagcaaatgaagaaattttttctcaactagtaaaaaacaatcatgttctttggaaatatgattatttcccta 20418499  T
Q  291 attcaca 297  Q
    |||||||    
T  20418498 attcaca 20418492  T

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Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 91 - 283
Target Start/End: Original strand, 20417018 - 20417210
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20417018 tgttgggatgttttggcctactattacattagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 20417117  T
Q  191 ctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattat 283  Q
    ||||||||| ||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  20417118 ctttcttctttaactcacgagggaaaccaagaaaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattat 20417210  T

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Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 91 - 283
Target Start/End: Complemental strand, 20416126 - 20415934
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20416126 tgttgggatgttttggcctactattacattaataccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 20416027  T
Q  191 ctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattat 283  Q
    ||||||||| ||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  20416026 ctttcttctttaactcacgagggaaagcaagaaaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattat 20415934  T

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Target: scaffold0146 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 8612 - 8754
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||  |||||||||||    
T  8612 tgttgagaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaac 8711  T
Q  191 ctttcttctataactcatgaaggaaaccaagcaaatgaagaag 233  Q
    ||||||||| | | ||||||||| ||||| |  ||||||||||    
T  8712 ctttcttctttgagtcatgaagggaaccacgtgaatgaagaag 8754  T

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Target: scaffold0083 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 34326 - 34454
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaac 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||  |||||||||||    
T  34326 tgttgtgaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaac 34425  T
Q  191 ctttcttctataactcatgaaggaaacca 219  Q
    ||||||||| | | ||||||||| |||||    
T  34426 ctttcttctttgagtcatgaagggaacca 34454  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 246
Target Start/End: Complemental strand, 15018711 - 15018556
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct---aatattttgcaatctcct 187  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||  ||||||||||||||||||||   |||||| | ||||  |||    
T  15018711 tgttgggaagttttggcctactattacactagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcct 15018612  T
Q  188 aacctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaaca 246  Q
    ||| ||||||   ||  ||||||||||||| |||  |||||||||  ||||||||||||    
T  15018611 aacatttctt---tatgtcatgaaggaaacaaagagaatgaagaaactttttctcaaca 15018556  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 19457214 - 19457292
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    ||||||||||||||| |||||||||| | |||||||||| |  |||||||| |||||  | ||||||||||||||||||    
T  19457214 tgttgggaagttttgacctactattaaattagtaccttcttataagttggtttgtgttttcaaatgttgggattcttct 19457292  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 19458927 - 19459005
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    |||||| || ||||||||||||||| || |||||| ||| || |||||||| |||||  | ||||||||||||| ||||    
T  19458927 tgttggaaaattttggcctactattgcattagtacattcttctaagttggtttgtgttttcaaatgttgggatttttct 19459005  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 249
Target Start/End: Original strand, 29950837 - 29950995
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct---aatattttgcaatctcct 187  Q
    |||| ||||||||||||||||||||||| |||||||||| || |||||||| |||||  ||||||||||||||||||||   |||||| | ||||  |||    
T  29950837 tgttaggaagttttggcctactattacattagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcct 29950936  T
Q  188 aacctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaacaagt 249  Q
    ||| ||||||   ||  ||||||||||||| |||  |||||||||  |||||||||||||||    
T  29950937 aacatttctt---tatgtcatgaaggaaacaaagagaatgaagaaactttttctcaacaagt 29950995  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 22299303 - 22299458
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct---aatattttgcaatctcct 187  Q
    ||||| |||||||||||||||||||||| |||||||||| || || ||||| |||||  | ||||||||||||||||||   |||||| | ||||  |||    
T  22299303 tgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttctaatattattcaattgcct 22299402  T
Q  188 aacctttcttctataactcatgaaggaaaccaagcaaatgaagaagttttttctcaaca 246  Q
    ||| ||||||   ||  ||||||||||||| |||  |||||||||  ||||||||||||    
T  22299403 aacatttctt---tatgtcatgaaggaaacaaagagaatgaagaaactttttctcaaca 22299458  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 24807356 - 24807278
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    ||||| |||||||||||||||||||||| |||||||||| || || ||||| |||||  | ||||||||||||||||||    
T  24807356 tgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttct 24807278  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 23732717 - 23732640
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    ||||||||||||||  |||||||||||| |||||||||| || |||||| || ||||  | || |||||||||||||||    
T  23732717 tgttgggaagtttttccctactattacattagtaccttcttctaagttgtta-gtgttttcaagtgttgggattcttct 23732640  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 22063300 - 22063222
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||| |||||  | | ||||||||||||||||    
T  22063300 tgttgggaagttttggcctactattacattagtaccttcttctaagttggtttgtgttttcagatgttgggattcttct 22063222  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 20189868 - 20189759
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttggga---ttcttctaatattttgcaatctcct 187  Q
    ||||||||||||||  |||||||||||| |||||| ||| || |||||||| |||||  | |||||||||||   ||||||||||||| | ||||  |||    
T  20189868 tgttgggaagtttttccctactattacattagtacattcttctaagttggtttgtgttttcaaatgttgggattgttcttctaatattattcaattgcct 20189769  T
Q  188 aacctttctt 197  Q
    ||| ||||||    
T  20189768 aacatttctt 20189759  T

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Target: scaffold1778 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 1252 - 1330
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    ||||| |||||||||||||||||||||| |||||||||| || || ||||| |||||  | ||||||||||||||||||    
T  1252 tgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttct 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 21585786 - 21585688
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaa 189  Q
    |||||||||||||||||||||||  | ||||||||||||||| || || || |||   ||||| ||||||| |||| ||| |||||| |||||||||||    
T  21585786 tgttgggaagttttggcctactacaatactagtaccttcatctaaattagtttgtacggttaagtgttggggttctcctattatttttcaatctcctaa 21585688  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 40999290 - 40999212
Alignment:
Q  91 tgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 169  Q
    ||||| |||||||||||||||||| ||| ||||| |||| || || ||||| |||||  | |||| |||||||||||||    
T  40999290 tgttgagaagttttggcctactatgacattagtagcttcttctaaattggtttgtgttttcaaattttgggattcttct 40999212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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