View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_high_36 (Length: 318)
Name: NF14323_high_36
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 34817737 - 34817457
Alignment:
| Q |
1 |
acaactaattcacacattcgttcattcacattttgaattttcactacaaccaattttcttcaccttgtaacaacaaattcaaatttctcataacattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817737 |
acaactaattcacacattcgttcattcacattttgaattttcactacaaccaattttcttcaccttgtaacaacaaattcaaatttctcataacattttc |
34817638 |
T |
|
| Q |
101 |
atcttctccatagtttctagaagaaataaacaatgttctattcacaccagcttctagctcgcaaagcacctctcggtcaaatttggtatcaatctcacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817637 |
atcttctccatagtttctagaagaaataaacaatgttctattcacaccagcttctagctcgcaaagcacctctcggtcaaatttggtatcaatctcacat |
34817538 |
T |
|
| Q |
201 |
ttcatattcattttcatttgcatcttcatctctctgtttttgcgnnnnnnncaatgttactaaaatgaggatcggaatcgattttttgtttgaaggatg |
299 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817537 |
ttcatat------------------tcatctctctgtttttgcgtttttttcaatgttactaaaatgaggatcggaatcgattttttgtttgaaggatg |
34817457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 35867805 - 35867676
Alignment:
| Q |
53 |
attttcttcaccttgtaacaacaaattcaaatttctcataacattttcatcttctccatagtttctagaagaaataaacaatgttctattcacaccagct |
152 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||| | ||||| |||||||||| || ||||| ||||| |
|
|
| T |
35867805 |
attttcttcaccttataacaacacattcaaatttctttgaacaatttcaaaatcttcatagct------agaaacaaacaatgttttactcacatcagct |
35867712 |
T |
|
| Q |
153 |
tctagctcgcaaagcacctctcggtcaaatttggta |
188 |
Q |
| |
|
||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
35867711 |
tcttgctagaaaagcacctctcggtcaaatttggta |
35867676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University