View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_42 (Length: 278)
Name: NF14323_high_42
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 10971125 - 10971381
Alignment:
| Q |
5 |
caatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
104 |
Q |
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| T |
10971125 |
caatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
10971224 |
T |
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| Q |
105 |
caatatcacagtgtatcatcatctttaaattatgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgtagta |
204 |
Q |
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| T |
10971225 |
caatatcacagtgtatcatcatctttaaattatgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatctttggtgtagta |
10971324 |
T |
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| Q |
205 |
gtaaaataattatgtttgctatttttatgatgttttaatgagtcttgaagtttacct |
261 |
Q |
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| T |
10971325 |
gtaaaataattatgtttgctatttttatgatgttttaatgagtcttgaagtttacct |
10971381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30509486 - 30509247
Alignment:
| Q |
1 |
atgccaatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatgg |
100 |
Q |
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| T |
30509486 |
atgccaatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatgg |
30509387 |
T |
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| Q |
101 |
agtacaatatcacagtgtatcatcatctttaaattatgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgt |
200 |
Q |
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| T |
30509386 |
agtacaatatcacagtgtatcatcatctttaaattatgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgt |
30509287 |
T |
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| Q |
201 |
agtagtaaaataattatgtttgctatttttatgatgtttt |
240 |
Q |
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| T |
30509286 |
agcagtaaaataattatgtttgctatttttatgatgtttt |
30509247 |
T |
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