View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_high_48 (Length: 247)
Name: NF14323_high_48
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39680376 - 39680146
Alignment:
| Q |
1 |
ccaaattccccaccttcaatctctcccattttcaaccaatcatcaacattttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39680376 |
ccaaatttcccaccttcaatctctcccattttcaaccaatcatcaacattttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaac |
39680277 |
T |
|
| Q |
101 |
tcatagccataggtaacttactttgtggaccctctacatcatcaccaccaacatcaaaaacaaacttccttttctcgcttctgttattactactactgct |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39680276 |
tcatagccataggtaacttactctgtggaccctctacatcatcaccaccaacatcaaaaacaaactttcttttctcgcttctgttattactactactgct |
39680177 |
T |
|
| Q |
201 |
actactaccgccagagctttcaccttcctct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39680176 |
actactaccgccagagctttcaccttcctct |
39680146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University