View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_5 (Length: 554)
Name: NF14323_high_5
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 15377194 - 15376660
Alignment:
| Q |
18 |
gaatttacgttcgtcttcgattaatccggcgatgaactcatcctccggcggcggataagattcaccatcggagaaggattccgtcggcgaatctgacgat |
117 |
Q |
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| T |
15377194 |
gaatttaccttcgtcttcgattaatccggcgatgaactcatcctccggcggcggataagattcaccatcggagaaggattccgtcggcgaatctgacgat |
15377095 |
T |
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| Q |
118 |
aagatgctggaggtttcctcgccgcataagaggtcggagtcggtgaaaaagttggagtatgaaatcgacatcgaga-------agattcattctgttgtt |
210 |
Q |
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| T |
15377094 |
aagatgctggaggtttcctcgccgcataagaggtcggagtcggtgaagaagttggagtatgaaatcgacatcgggagtggatgagattcattccggtgtt |
15376995 |
T |
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| Q |
211 |
gtcatggttttgggatgatcggagaaatcgccggaggttgatcggagaagtcgccgccggagtggatagcgttgatggtggtgagagtgtgaagtgggag |
310 |
Q |
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| T |
15376994 |
atcatggttttgggatgatcggagaagtcgccggaggttgatcggagaagttgccgccggagaggatagcgttgatggtggtgagagtgtgaagtgggag |
15376895 |
T |
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| Q |
311 |
agagtgtgggttgttgatgaaaggtacttgttgtaagtgctttgggtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccggg |
410 |
Q |
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| T |
15376894 |
agagtgtgggttgttgatgaaaggtacttgttgtaagttctttgagtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccggg |
15376795 |
T |
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| Q |
411 |
-nnnnnnntgggttttctgattttttagcgccagttgtacaaagcatgtgcttgtggagggtgaaaattacctcaacaaccccttggtaaaatttagtga |
509 |
Q |
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| T |
15376794 |
aaaaaaaatgggttttctgattttttagcgccagttgtacaaagcatgtgcttgtggaggcagaaaattacctcaacaaccccttggtaaaatttagtga |
15376695 |
T |
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| Q |
510 |
----tacttatttttaaaatagaagtaaaccatca |
540 |
Q |
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| T |
15376694 |
tatttatttatttttaaaatagaaataaatcatca |
15376660 |
T |
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