View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_56 (Length: 227)
Name: NF14323_high_56
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_56 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27268291 - 27268065
Alignment:
| Q |
1 |
tgatatcagggacggctggggggattctcctgtgaaggagcttgagggtatagtcagcaactgttgcagaagagaccttgtccttggactcagctcctgg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268291 |
tgataccagggacggctggggggattctcctgtgaaggagcttgaggatatagtcagcaactgttgcagaagagaccttgtccttggactcagctcctgg |
27268192 |
T |
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| Q |
101 |
ggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcaaaa |
200 |
Q |
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| T |
27268191 |
ggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcaaaa |
27268092 |
T |
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| Q |
201 |
gttctgtcaatactatgttctccatca |
227 |
Q |
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| T |
27268091 |
gttctgtcaatactatgttctccatca |
27268065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21195756 - 21195531
Alignment:
| Q |
1 |
tgatatcagggacggctggggggattctcctgtgaaggagcttgagggtatagtcagcaactgttgcagaagagaccttgtccttggactcagctcctgg |
100 |
Q |
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||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
21195756 |
tgataccagggacagcagggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctgg |
21195657 |
T |
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| Q |
101 |
ggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcaaaa |
200 |
Q |
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| T |
21195656 |
ggtaaccatgctaggcttgaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataa |
21195557 |
T |
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| Q |
201 |
gttctgtcaatactatgttctccatc |
226 |
Q |
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| T |
21195556 |
gttctgtcaataccatgttctccatc |
21195531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27251505 - 27251280
Alignment:
| Q |
1 |
tgatatcagggacggctggggggattctcctgtgaaggagcttgagggtatagtcagcaactgttgcagaagagaccttgtccttggactcagctcctgg |
100 |
Q |
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||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
27251505 |
tgataccagggacagcagggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctgg |
27251406 |
T |
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| Q |
101 |
ggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcaaaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27251405 |
ggtaaccatgctaggcttgaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataa |
27251306 |
T |
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| Q |
201 |
gttctgtcaatactatgttctccatc |
226 |
Q |
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||||| ||||||| |||||||||||| |
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| T |
27251305 |
gttctatcaataccatgttctccatc |
27251280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 49364671 - 49364732
Alignment:
| Q |
89 |
ctcagctcctggggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttct |
150 |
Q |
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|||||| || || |||||||||||||||||||| | ||| |||||||| |||||||||||| |
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| T |
49364671 |
ctcagcaccaggtgtaaccatgctaggcttgagcaaaattccctcaaaaaggacattgttct |
49364732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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