View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_high_7 (Length: 548)
Name: NF14323_high_7
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 8124157 - 8124692
Alignment:
| Q |
1 |
tagtaaccattgattatattgttcaatcatctcacttttttgttctttgtttttatatgtttacctctttgtaaggaaagacaggccacaaataaccagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8124157 |
tagtaaccattgattatattgttcaatcatctcacttttttgttctttgtttttatatgtttacctctttgtaaggaaagacagaccacaaataaccagt |
8124256 |
T |
|
| Q |
101 |
tattgtttgatacaatttttcctacttggactagtcgggtaaattctcttttcatgaaactactccattcatcactaagtgcatgtttggattgttgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8124257 |
tattgtttgatacaatttttcctacttggactagtcgggtaaattctcttttcatgaaactactccattcatcactaagtgcatgtttggattgttgatg |
8124356 |
T |
|
| Q |
201 |
agtttgacaaaattacggtataatagatttcgttgaagctccaaagtgtaatttttgtcaaaatcacggtggtacaccatgattctaccaaatcgccgtc |
300 |
Q |
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| T |
8124357 |
agtttgacaaaattacggtataatagatttcgttgaagctccaaagtgtaatttttgtcaaaatcacggtggtacaccatgattctaccaaatcgccgtc |
8124456 |
T |
|
| Q |
301 |
aattcagacatgtactaaattaataaaaaacatgattctgtaacttgaaatgataccttctgacagaataacaatgaaagaaggattttaccttttgggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8124457 |
aattcagacatgtactaaattaataaaaaacatgattgtgtaacttgaaatgataccttctgacagaataacaatgaaagaaggattttaccttttgggt |
8124556 |
T |
|
| Q |
401 |
ttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggctgtgatattaaggcaagctataacacttt |
500 |
Q |
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| T |
8124557 |
ttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggctgtgatattaaggcaagctataacacttt |
8124656 |
T |
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| Q |
501 |
aactctagagcttaaagttcagaccttttttgatga |
536 |
Q |
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| T |
8124657 |
aactctagagcttaaagttcagaccttttttgatga |
8124692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 5413958 - 5414019
Alignment:
| Q |
232 |
gttgaagctccaaagtgtaatttttgtcaaaatcacggtggtacaccatgattctaccaaat |
293 |
Q |
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| T |
5413958 |
gttgaagctccaaagtgtagcttttgtcaaaatcacgacggcacaccatgatttttccaaat |
5414019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 19413408 - 19413370
Alignment:
| Q |
227 |
atttcgttgaagctccaaagtgtaatttttgtcaaaatc |
265 |
Q |
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| T |
19413408 |
attttgttgaagctccaaagtgtaacttttgtcaaaatc |
19413370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 471
Target Start/End: Complemental strand, 52730515 - 52730445
Alignment:
| Q |
401 |
ttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggc |
471 |
Q |
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| T |
52730515 |
ttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatttgtcatggc |
52730445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 43598562 - 43598608
Alignment:
| Q |
226 |
gatttcgttgaagctccaaagtgtaatttttgtcaaaatcacggtgg |
272 |
Q |
| |
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| T |
43598562 |
gattttgttgaagttccaaaatataatttttgtcaaaatcacggtgg |
43598608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 3078929 - 3078963
Alignment:
| Q |
232 |
gttgaagctccaaagtgtaatttttgtcaaaatca |
266 |
Q |
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| T |
3078929 |
gttgaagcttcaaagtgtaatttttgtcaaaatca |
3078963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 30007498 - 30007538
Alignment:
| Q |
226 |
gatttcgttgaagctccaaagtgtaatttttgtcaaaatca |
266 |
Q |
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||||| |||||||||| ||||||||| |||||||||||||| |
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| T |
30007498 |
gattttgttgaagctcgaaagtgtaacttttgtcaaaatca |
30007538 |
T |
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