View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_10 (Length: 492)
Name: NF14323_low_10
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 36352754 - 36353229
Alignment:
| Q |
1 |
agaacttcaataaataatgtcactttgattttgtcaaagccaacttaataccaaatatttctttggtcaatcgcacggtggcatcactagttttcaaact |
100 |
Q |
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| T |
36352754 |
agaacttcaataaataatgtcactttgattttgtcaaagccaacttaataccaaatatttctttggtcaatcgcacggtgccatcactagttttcaaact |
36352853 |
T |
|
| Q |
101 |
tgggctatcacgaatttagtgtacatgtgattttatgctaacctttacattaaacttgttttcaaatagaaatatacggatataaattacttcactttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36352854 |
cgggctatcacgaatttagtgtacatgtgattttatgctaacctttacattaaacttgttttcaaatagaaatatatggatataaattacttcactttaa |
36352953 |
T |
|
| Q |
201 |
actcaaattttacaaaatcaaatttcttcaaatatatatttactaaacactaaacacacactacttacaacatgagttggcacaacattatgattccaac |
300 |
Q |
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| T |
36352954 |
actcaa-ttttacgaaatcaaatttcttcaaatatatatttactaaacaccaaacacacactacttacaacatgagttggcacaacattatgattccaac |
36353052 |
T |
|
| Q |
301 |
ccttctctttctcaaaatcaaacatttggaaatgagccttccaatggtatgggtatatggagaatgagtgtactgatatcatgtatgtgatgtgatattg |
400 |
Q |
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| T |
36353053 |
ccttctctttctcaaaatcaaacatttggaaatgagccttccaatggtatgggtatatggagaatgagtgtactgatatcatgtatgtgatgtgatattg |
36353152 |
T |
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| Q |
401 |
gctatatatagtttgttcctgttgactgactaatgcccaattaaatttcaaattaaatggattgaattatagatttt |
477 |
Q |
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| T |
36353153 |
gctatatatagtttgttcctgttgactgactaatgcccaattaaatttcaaattaaatggattgaattatagatttt |
36353229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 48360951 - 48360910
Alignment:
| Q |
182 |
ataaattacttcactttaaactcaaattttacaaaatcaaatt |
224 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
48360951 |
ataaattacttcacttcaaactc-aattttacaaaatcaaatt |
48360910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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