View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14323_low_14 (Length: 476)

Name: NF14323_low_14
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14323_low_14
NF14323_low_14
[»] chr3 (22 HSPs)
chr3 (227-466)||(2392501-2392740)
chr3 (227-459)||(2394255-2394487)
chr3 (233-461)||(20611636-20611864)
chr3 (234-466)||(34475749-34475981)
chr3 (232-461)||(19176355-19176583)
chr3 (227-466)||(45163696-45163941)
chr3 (227-393)||(47235563-47235729)
chr3 (240-457)||(23328354-23328567)
chr3 (231-461)||(40023572-40023800)
chr3 (341-461)||(9584053-9584173)
chr3 (288-449)||(25647593-25647753)
chr3 (388-466)||(17550965-17551043)
chr3 (360-461)||(45398776-45398877)
chr3 (377-457)||(43012372-43012452)
chr3 (288-437)||(37123291-37123439)
chr3 (343-423)||(14193903-14193983)
chr3 (288-437)||(14755289-14755435)
chr3 (367-426)||(14879422-14879481)
chr3 (371-426)||(31482875-31482930)
chr3 (391-437)||(33143973-33144019)
chr3 (391-435)||(19295891-19295935)
chr3 (391-435)||(20710734-20710778)
[»] chr1 (23 HSPs)
chr1 (227-459)||(24449932-24450164)
chr1 (232-466)||(31585755-31585989)
chr1 (232-466)||(41920305-41920538)
chr1 (232-466)||(46692814-46693048)
chr1 (232-466)||(5389416-5389650)
chr1 (234-466)||(30685899-30686131)
chr1 (232-461)||(24684478-24684705)
chr1 (232-459)||(20113523-20113750)
chr1 (240-426)||(7857515-7857699)
chr1 (231-461)||(24658782-24659010)
chr1 (288-461)||(46814467-46814638)
chr1 (352-466)||(5459133-5459247)
chr1 (288-437)||(9313313-9313461)
chr1 (343-455)||(27031846-27031958)
chr1 (288-435)||(34774781-34774925)
chr1 (288-461)||(32864561-32864734)
chr1 (367-437)||(17033573-17033643)
chr1 (391-437)||(27905423-27905469)
chr1 (231-437)||(38544762-38544966)
chr1 (379-426)||(6583251-6583298)
chr1 (288-374)||(16147464-16147549)
chr1 (342-426)||(4651742-4651826)
chr1 (231-263)||(27032059-27032091)
[»] chr8 (16 HSPs)
chr8 (232-466)||(34389000-34389234)
chr8 (233-466)||(24995390-24995623)
chr8 (236-466)||(9519355-9519585)
chr8 (232-466)||(32066290-32066524)
chr8 (232-466)||(37986853-37987087)
chr8 (232-461)||(36630689-36630918)
chr8 (328-459)||(31207364-31207494)
chr8 (288-437)||(10248577-10248725)
chr8 (343-461)||(15821379-15821497)
chr8 (359-466)||(16457456-16457562)
chr8 (232-332)||(31210319-31210420)
chr8 (357-466)||(12898269-12898378)
chr8 (288-458)||(17657005-17657173)
chr8 (402-466)||(20138448-20138512)
chr8 (342-437)||(30236152-30236247)
chr8 (387-466)||(41893396-41893474)
[»] chr7 (32 HSPs)
chr7 (232-466)||(38306113-38306347)
chr7 (232-469)||(47325877-47326114)
chr7 (232-461)||(3419656-3419885)
chr7 (232-466)||(5860283-5860517)
chr7 (232-461)||(25160667-25160896)
chr7 (238-458)||(10244041-10244260)
chr7 (235-461)||(3866972-3867197)
chr7 (299-457)||(41089752-41089910)
chr7 (245-466)||(37794865-37795075)
chr7 (232-460)||(33434962-33435189)
chr7 (231-461)||(34389814-34390043)
chr7 (348-461)||(6584877-6584990)
chr7 (288-461)||(35745827-35745998)
chr7 (298-416)||(44755546-44755662)
chr7 (253-449)||(16954527-16954722)
chr7 (291-437)||(6716760-6716905)
chr7 (288-437)||(1320703-1320851)
chr7 (337-426)||(42533287-42533376)
chr7 (250-449)||(16828948-16829146)
chr7 (288-426)||(8745062-8745199)
chr7 (356-437)||(3478328-3478409)
chr7 (402-466)||(44353559-44353623)
chr7 (288-437)||(13311747-13311896)
chr7 (301-426)||(24324833-24324957)
chr7 (391-435)||(27993562-27993606)
chr7 (391-435)||(35206719-35206763)
chr7 (391-425)||(25153231-25153265)
chr7 (380-437)||(9428129-9428186)
chr7 (392-429)||(17802848-17802885)
chr7 (342-426)||(11379162-11379246)
chr7 (342-426)||(38485518-38485602)
chr7 (391-435)||(46262145-46262189)
[»] chr2 (24 HSPs)
chr2 (232-466)||(39338860-39339094)
chr2 (232-466)||(10523949-10524187)
chr2 (19-144)||(32488645-32488770)
chr2 (26-125)||(32160397-32160496)
chr2 (231-461)||(7874144-7874372)
chr2 (335-457)||(387129-387250)
chr2 (231-425)||(17105263-17105457)
chr2 (343-461)||(14405162-14405279)
chr2 (298-426)||(14106559-14106686)
chr2 (19-135)||(32184882-32184997)
chr2 (288-459)||(1269391-1269562)
chr2 (45-119)||(32179271-32179345)
chr2 (286-461)||(10173578-10173753)
chr2 (343-424)||(41086825-41086905)
chr2 (391-458)||(13337285-13337352)
chr2 (391-461)||(4471934-4472004)
chr2 (231-273)||(16952569-16952611)
chr2 (231-273)||(17023234-17023276)
chr2 (231-273)||(17060540-17060582)
chr2 (231-273)||(17079022-17079064)
chr2 (391-437)||(22885157-22885203)
chr2 (342-416)||(37770686-37770760)
chr2 (76-117)||(32176588-32176629)
chr2 (395-435)||(9560814-9560854)
[»] chr4 (20 HSPs)
chr4 (232-461)||(8254879-8255108)
chr4 (232-461)||(8268297-8268526)
chr4 (232-459)||(30964293-30964520)
chr4 (232-466)||(4305577-4305811)
chr4 (288-461)||(31050662-31050833)
chr4 (287-459)||(30167566-30167737)
chr4 (288-459)||(53823423-53823593)
chr4 (288-461)||(25753081-25753253)
chr4 (307-426)||(2825712-2825829)
chr4 (288-426)||(39421048-39421185)
chr4 (288-437)||(19815248-19815396)
chr4 (391-437)||(21387228-21387274)
chr4 (288-403)||(19673010-19673124)
chr4 (367-437)||(35800476-35800546)
chr4 (252-437)||(22811184-22811367)
chr4 (391-435)||(53756767-53756811)
chr4 (388-455)||(38637238-38637305)
chr4 (342-437)||(46698809-46698904)
chr4 (408-458)||(35341341-35341391)
chr4 (242-322)||(12296038-12296118)
[»] chr5 (13 HSPs)
chr5 (232-466)||(698213-698447)
chr5 (232-461)||(18593095-18593324)
chr5 (236-461)||(34377954-34378179)
chr5 (282-461)||(29087383-29087562)
chr5 (242-437)||(7392055-7392249)
chr5 (288-426)||(13954269-13954405)
chr5 (292-437)||(33258906-33259050)
chr5 (288-437)||(7195263-7195410)
chr5 (288-458)||(8297377-8297546)
chr5 (288-437)||(14302454-14302602)
chr5 (288-434)||(26045991-26046136)
chr5 (392-437)||(39184211-39184256)
chr5 (391-461)||(22675324-22675394)
[»] scaffold0068 (1 HSPs)
scaffold0068 (232-461)||(35772-36001)
[»] chr6 (9 HSPs)
chr6 (232-466)||(3117344-3117579)
chr6 (288-458)||(16510304-16510474)
chr6 (291-461)||(20701803-20701972)
chr6 (291-421)||(3880623-3880752)
chr6 (243-458)||(32935342-32935556)
chr6 (391-435)||(7546455-7546499)
chr6 (288-399)||(15132585-15132694)
chr6 (391-437)||(26216043-26216089)
chr6 (395-435)||(20499934-20499974)
[»] scaffold0200 (1 HSPs)
scaffold0200 (288-461)||(19291-19464)
[»] scaffold0050 (1 HSPs)
scaffold0050 (288-437)||(36616-36764)
[»] scaffold0119 (1 HSPs)
scaffold0119 (288-459)||(42140-42311)
[»] scaffold0063 (1 HSPs)
scaffold0063 (288-430)||(58036-58177)
[»] scaffold1613 (1 HSPs)
scaffold1613 (231-437)||(1041-1245)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 227 - 466
Target Start/End: Complemental strand, 2392740 - 2392501
Alignment:
Q  227 cacgtcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtt 326  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||  || ||| ||||| ||| ||||| |||||||||||||||||||||||||||||    
T  2392740 cacgccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtt 2392641  T
Q  327 tgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||    
T  2392640 tgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattgg 2392541  T
Q  427 aagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||| |||||| || |||||||||||||||||||| ||||    
T  2392540 aagtcagttctttgtcttaagttggtttttgggctttgtg 2392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 227 - 459
Target Start/End: Complemental strand, 2394487 - 2394255
Alignment:
Q  227 cacgtcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtt 326  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||  || ||| ||||| ||| ||||| |||||||||||||||||||||||||||||    
T  2394487 cacgccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtt 2394388  T
Q  327 tgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||    
T  2394387 tgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattgg 2394288  T
Q  427 aagttagttctgtgacttaagttggtttttggg 459  Q
    |||| |||||| || ||||||||||||||||||    
T  2394287 aagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 233 - 461
Target Start/End: Original strand, 20611636 - 20611864
Alignment:
Q  233 atgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgactt 332  Q
    |||| ||||||||||||||||||||||||||||| | ||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20611636 atgtttttcgtcttacatattgtgtgctggttttcggtgggtcggttcatttggtttcgagatcaggagtcggggtctagctgcaatctttgtttgactt 20611735  T
Q  333 ggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtta 432  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||| ||||||| ||||||| ||||||||| ||| |    
T  20611736 gatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtca 20611835  T
Q  433 gttctgtgacttaagttggtttttgggct 461  Q
    ||||| |||||||||||||||||||||||    
T  20611836 gttctttgacttaagttggtttttgggct 20611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 234 - 466
Target Start/End: Complemental strand, 34475981 - 34475749
Alignment:
Q  234 tgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttg 333  Q
    ||||||| ||||||||||| ||||||||||||| |||||  |||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  34475981 tgtcttttgtcttacatatcgtgtgctggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttg 34475882  T
Q  334 gtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttag 433  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||| ||| |     
T  34475881 gtttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaa 34475782  T
Q  434 ttctgtgacttaagttggtttttgggctctgtg 466  Q
     |||  || |||||||| |||||||||| ||||    
T  34475781 atcttggaattaagttgatttttgggctttgtg 34475749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 19176355 - 19176583
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| |||||| ||||||||||||||||| | |||   | ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  19176355 catgtctttcctcttacttattgtgtgctggttttcggtgggctggttcctttggcttcgagatcaggagtcggggtctagctgcaatctttgtttgact 19176454  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    |  ||||||||||||||| ||||||||| | ||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||| |||     
T  19176455 taatttggtttttctctgatgtaccgggagtgag-ggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 19176553  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| ||||| |||||||||||||||||    
T  19176554 agttctttgactcaagttggtttttgggct 19176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 227 - 466
Target Start/End: Original strand, 45163696 - 45163941
Alignment:
Q  227 cacgtcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtt 326  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |  || ||| ||||| ||| ||||| | |||||||||||||||||||||||||||    
T  45163696 cacgccatgtctttcgtcttacatattgtgtgctggtttttgataggccggttcatttggcttcaagatcggaagtcggggtctagctgcaatctttgtt 45163795  T
Q  327 tgacttggtttggtttttctctgg----tgtaccgggggcgagcggtgccctgctaatttggtactatagtct--ggtggaccgatcacttttgatccga 420  Q
    |||||||||||| ||||||||| |    ||||||| ||||||| |||||||||||||||||||||||||||||   |||| ||||||||||||||| |||    
T  45163796 tgacttggtttgatttttctctagtgcatgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcga 45163895  T
Q  421 gatcggaagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||| ||||| |||| | || |||||||||||||||||||| ||||    
T  45163896 gatcagaagtcagttttttgtcttaagttggtttttgggctttgtg 45163941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 47235563 - 47235729
Alignment:
Q  227 cacgtcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtt 326  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||  || ||| ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  47235563 cacgccatgtctttcgtcttacataatgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcagggtctagctgcaatctttgtt 47235662  T
Q  327 tgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagt 393  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||    
T  47235663 tgacttggtttggtttttctccagtgtaccgggggcgaggggtgccctgctaatttgggactatagt 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 240 - 457
Target Start/End: Complemental strand, 23328567 - 23328354
Alignment:
Q  240 tcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttgg 339  Q
    |||||||||||||||||||||||| |  |||||  || ||  ||| | ||||||||| ||||| || ||||||||||||| ||||||||||||| | |||    
T  23328567 tcgtcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaat-tttgtttgacttgatatgg 23328471  T
Q  340 tttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgt 439  Q
    | || ||||||||||||||||||||| ||||||||| | ||||||| ||| ||| |||||||||||||||||||||| ||||||||| |||||| | | |    
T  23328470 tgtt-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagcttttt 23328372  T
Q  440 gacttaagttggtttttg 457  Q
    | || |||||||||||||    
T  23328371 ggctcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 40023800 - 40023572
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    |||||||| ||||||||||||||||||  |||| |  | |||| || ||  ||| | ||||||||| | ||| || |||||||||||||| |  ||||||    
T  40023800 tcatgtctatcgtcttacatattgtgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgac 40023701  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    ||| | |||| || |||| |||||||||||||||| ||||||||||| |||| ||  || |||||||||||||||||||||||||| ||||||||| |||    
T  40023700 ttgatatggtgtt-ctctagtgtaccgggggcgag-ggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagt 40023603  T
Q  431 tagttctgtgacttaagttggtttttgggct 461  Q
       |||| || ||||||||||||||||||||    
T  40023602 cgattctttggcttaagttggtttttgggct 40023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 9584173 - 9584053
Alignment:
Q  341 ttttctctggtgtaccgggggc-gagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgt 439  Q
    |||||||| ||||||||||||  ||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| ||| |||||| |    
T  9584173 ttttctcttgtgtaccggggggagag-ggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttcttt 9584075  T
Q  440 gacttaagttggtttttgggct 461  Q
    | || ||| |||||||||||||    
T  9584074 gtctcaagatggtttttgggct 9584053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 449
Target Start/End: Original strand, 25647593 - 25647753
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||| | |||||||| ||||||||||||| | |||||| | || |||||| |||||||||||||||||| | ||  |||||||| || ||||||| |    
T  25647593 ttcgagaacgggagtcggtgtctagctgcaat-tctgtttggcgtgatttggtgtttctctggtgtaccgggagtgaagggtgcccttctgatttggtcc 25647691  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagtt 449  Q
    || ||||||  || || |||||||||||| ||||||||| |||| ||||| || ||||||||    
T  25647692 taaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 388 - 466
Target Start/End: Original strand, 17550965 - 17551043
Alignment:
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||||| ||||| ||||||||||||||||| ||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 17551043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 461
Target Start/End: Original strand, 45398776 - 45398877
Alignment:
Q  360 ggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttggg 459  Q
    |||||| ||||||||||| ||||||   || |||||||||||||||||||||||||| ||||||||  ||| || ||| ||| |||||||||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  460 ct 461  Q
    ||    
T  45398876 ct 45398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  377 taatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttg 457  Q
    ||||||||| ||| |||||||||| ||||||||||||||| ||||||||| ||| |||||| ||||| |||||||||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 37123291 - 37123439
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| ||||||||||||| |||||||| | || |||||| |||||||| |||||||  || ||| ||||||||  |  |||||| |    
T  37123291 ttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggtcc 37123389  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || | | |||||| ||||||||||||||| |||||| || ||| ||||||    
T  37123390 taaattttggtgggccgatcacttttgattcgagattgggagtcagttct 37123439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 14193903 - 14193983
Alignment:
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagat 423  Q
    |||| |||||||||||| | ||| |||||||| || ||||||| ||| ||||||| |||||||||||||||||| ||||||    
T  14193903 ttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagat 14193983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 14755435 - 14755289
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| ||||||||  ||||||||||||||| ||||  |  | |||||| ||||||||||||||||  || ||| ||||||||  |  ||| || |    
T  14755435 ttcgagatcgggagtcggtatctagctgcaatctt-gtttcgcgcgttttggtgtttctctggtgtaccgaaggtgaggggtgccctttt--ttttgtgc 14755339  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || |||||||||| ||||||||||||||| | ||||||| ||| ||||||    
T  14755338 taaagtctggtgggccgatcacttttgattcaagatcgggagtcagttct 14755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 426
Target Start/End: Original strand, 14879422 - 14879481
Alignment:
Q  367 ggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    |||||||| || ||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  14879422 ggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgg 14879481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 31482875 - 31482930
Alignment:
Q  371 ccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    |||| |||||||||| ||||||||||| || | ||||||||||||| |||||||||    
T  31482875 ccctactaatttggttctatagtctggcgggcggatcacttttgattcgagatcgg 31482930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 33144019 - 33143973
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||||||||||| |||||||||||||| ||||||||| ||| ||||||    
T  33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagttct 33143973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 19295935 - 19295891
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||    
T  19295935 agtctggtgggcctatcacttttgattcgatatcggaagttagtt 19295891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 20710778 - 20710734
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||| ||||||||||||||| ||||||||| || |||||    
T  20710778 agtctggtgggccgatcacttttgattcgagatcgggagctagtt 20710734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 227 - 459
Target Start/End: Complemental strand, 24450164 - 24449932
Alignment:
Q  227 cacgtcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtt 326  Q
    |||| |||||||||||||||||||||| |||| ||||||| |||||  |||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  24450164 cacgccatgtctttcgtcttacatattatgtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 24450065  T
Q  327 tgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||||||||  ||||||||    
T  24450064 tgacttggtttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcgg 24449965  T
Q  427 aagttagttctgtgacttaagttggtttttggg 459  Q
    |||| |||||| || ||||||||||||||||||    
T  24449964 aagtcagttctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 31585989 - 31585755
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||||||||||||| ||| ||||| |||||| |||  || ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31585989 catgtctttcgtcttacatagtgtttgctgatttttggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgact 31585890  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||     
T  31585889 tgatttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtc 31585790  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||||||||||||| ||||    
T  31585789 agttctttgactcaagttggtttttgggctttgtg 31585755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 41920305 - 41920538
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||| ||||| | |||  || ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41920305 catgtctttcgtcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgact 41920404  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| |||     
T  41920405 tgatttggtttttctctggtgta-ctggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtc 41920503  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||| ||||||||| ||||    
T  41920504 agttctttgactcaagttggattttgggctttgtg 41920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 46693048 - 46692814
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||| ||||||||||||||||||| ||||| | |||  |||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  46693048 catgtcttttgtcttacatattgtgtgctagttttcggtgggccgattcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgact 46692949  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||| |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  46692948 tgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagtt 46692849  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| || || ||||||||||||||||| ||||    
T  46692848 agttctttggctcaagttggtttttgggctttgtg 46692814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 5389650 - 5389416
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| ||||||||||||||||||||||||   |||  || ||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  5389650 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctgcaatctttgtttgact 5389551  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  || ||||||||||||||| ||||||||| |||     
T  5389550 tgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtc 5389451  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||| ||||||||||| ||||    
T  5389450 agttctttgactcaagtttgtttttgggctttgtg 5389416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 234 - 466
Target Start/End: Complemental strand, 30686131 - 30685899
Alignment:
Q  234 tgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttg 333  Q
    ||||||||||||||||||||||||| ||||||| | |||  || ||| ||||| ||||||||| ||||||| |||||| |||||||| ||||||||||||    
T  30686131 tgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttg 30686032  T
Q  334 gtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttag 433  Q
     |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| ||| ||    
T  30686031 atttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcag 30685932  T
Q  434 ttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||| ||||| ||||||| ||||||||| ||||    
T  30685931 ttctttgactcaagttggcttttgggctttgtg 30685899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 24684705 - 24684478
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| | |||  | |||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  24684705 catgtctttcgtcttacatattgtgtgctggttttcggtggc-caattcatttggcttcgagatcgggagtcggggtctagctgtaatctttgtttgact 24684607  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||| ||||||||||||||||||||| |||||||| |||||||| | ||| |||||||||| |||||||||||| || |||||||||| ||     
T  24684606 tgatttggtttt-ctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtc 24684508  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| |||||  ||||||||||||||||    
T  24684507 agttctttgactctagttggtttttgggct 24684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 232 - 459
Target Start/End: Complemental strand, 20113750 - 20113523
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| |||||||||||||||||| ||||| | |||  || ||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||      
T  20113750 catgtctttcatcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgttagata 20113651  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||  |||||| ||||||| | ||||||| | |     
T  20113650 tggtttggtttttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatc 20113551  T
Q  432 agttctgtgacttaagttggtttttggg 459  Q
    |||||| | |||||||||||||||||||    
T  20113550 agttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 240 - 426
Target Start/End: Original strand, 7857515 - 7857699
Alignment:
Q  240 tcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttgg 339  Q
    ||||||||||||||||||||||||||    |||  |||||  ||| | ||||||||| ||||| || |||||| |||||| | ||||||||||| | ||     
T  7857515 tcgtcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaat-tatgtttgacttgatatg- 7857612  T
Q  340 tttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    || ||||||||||||| ||||||||| ||||||||||| ||||||| ||| |||||||||| ||||||||||||||| |||||||||    
T  7857613 ttgttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgg 7857699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 461
Target Start/End: Original strand, 24658782 - 24659010
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    |||||||| ||||||||||| |||||||||||  |  | |||  || ||  ||| | ||| ||||| ||||| || |||||||||||||| | |||||||    
T  24658782 tcatgtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcat-gtttgac 24658880  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    ||| | |||| || |||||||||| ||||||| || ||||||||||| ||||||| ||| |||||||||| || |||||||||||| ||||||||| |||    
T  24658881 ttgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagt 24658979  T
Q  431 tagttctgtgacttaagttggtttttgggct 461  Q
     || ||| || || |||||||||||||||||    
T  24658980 cagctctttggctgaagttggtttttgggct 24659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 461
Target Start/End: Complemental strand, 46814638 - 46814467
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    |||||||||  |||| || |||||| ||||||| | |||||||||| | |||| || |||||||||||||||||| || ||||||||||| ||||||| |    
T  46814638 ttcgagatcgagagttggtgtctagttgcaatcct-gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggttc 46814541  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || |||||||||| ||||||||||||||| ||||||||| ||| || | | || || |||||||||||| ||||    
T  46814540 taaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggct 46814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 5459133 - 5459247
Alignment:
Q  352 gtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttgg 451  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||| | || | ||| | ||||||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  452 tttttgggctctgtg 466  Q
    |||||||||| ||||    
T  5459233 tttttgggctttgtg 5459247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 9313461 - 9313313
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| ||||| || ||||||||||||| |||||||| | || |||||| ||||||| ||||| |||| | ||| |||||||| || ||||||| |    
T  9313461 ttcgagatcgggagttggtgtctagctgcaat-tttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggtcc 9313363  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || ||||| |||| | ||||||||||||| ||||||||| ||| ||||||    
T  9313362 taaagtctagtgggctgatcacttttgattcgagatcgggagtcagttct 9313313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 455
Target Start/End: Complemental strand, 27031958 - 27031846
Alignment:
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgac 442  Q
    |||||||||||||||||||  || ||||||||||| ||||||| ||| ||||| |||| ||||||||||||||| ||||||||  ||| || ||| || |    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  443 ttaagttggtttt 455  Q
    | |||||||||||    
T  27031858 tcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 34774781 - 34774925
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||| | |||||||| ||||| || ||||||| ||||| |||| |||| | ||||||| || ||| ||||| ||| |||||||| || ||||||| |    
T  34774781 ttcgagaacgggagtcggtgtctaactacaatctt-gtttggcttgatttgatgtttctctagtatac-gggggtgagtggtgcccttctgatttggtcc 34774878  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    ||  ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  34774879 taacgtctggtggaccgatcacttttgat-cgagatcgggagtcagtt 34774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 461
Target Start/End: Complemental strand, 32864734 - 32864561
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||| ||| |||||||| |||||||| |||||||  |||| |||  |||||| ||| |||| | ||| | ||| ||| |||||||| |  ||||||| |    
T  32864734 ttcgaaatcaggagtcggtgtctagctacaatcttgttttggctttatttggtgtttatctgatctactgagggtgaggggtgcccttccgatttggtcc 32864635  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || || ||||||| || ||||||||| || |||||||||||||  ||||| ||||| ||||| | |||||||||    
T  32864634 taaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggct 32864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 17033573 - 17033643
Alignment:
Q  367 ggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||| || ||||||| |||||||||||||| ||||||||||||||  ||||||||| ||| ||||||    
T  17033573 ggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttct 17033643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 27905423 - 27905469
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  27905423 agtctggtggaccgatcacttttgattcgagatcagaagttagttct 27905469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 437
Target Start/End: Complemental strand, 38544966 - 38544762
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    ||||||| || ||||||||||||||||||||| || |  |||  |||||  ||| | ||||||||  ||||| || |||||||||||||| ||||||||     
T  38544966 tcatgtcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatc-ttgtttgat 38544868  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    |   |||||| ||||||||||| || |||   ||| ||| |||| || |||||||  |  |||||||||| |||||| |||||||| ||||||||| |||    
T  38544867 tgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagt 38544769  T
Q  431 tagttct 437  Q
     ||||||    
T  38544768 cagttct 38544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 426
Target Start/End: Complemental strand, 6583298 - 6583251
Alignment:
Q  379 atttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcgg 6583251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 16147464 - 16147549
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccct 374  Q
    ||||||||| ||||||   |||||||||||||| ||||||| |||| |||||| ||||||| | |||||||||| ||| ||| ||||    
T  16147464 ttcgagatcgggagtcactgtctagctgcaatc-ttgtttggcttgatttggtgtttctctagcgtaccgggggtgagaggttccct 16147549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 4651742 - 4651826
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgct-aatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||||||||||||  || |||||||| || |||||| | | | ||||||| || ||||||||||||||| |||||||||    
T  4651742 tttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccga-agtctggggggccgatcacttttgattcgagatcgg 4651826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 27032091 - 27032059
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggt 263  Q
    |||||||| ||||||||||||||||||||||||    
T  27032091 tcatgtctatcgtcttacatattgtgtgctggt 27032059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 34389234 - 34389000
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| ||| |  || ||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  34389234 catgtctttcgtcttacatattgtgtgctggttttcgataggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgact 34389135  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||   |||     
T  34389134 tgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtc 34389035  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||||||||||||| ||||    
T  34389034 agttctttgactcaagttggtttttgggctttgtg 34389000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 233 - 466
Target Start/End: Complemental strand, 24995623 - 24995390
Alignment:
Q  233 atgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgactt 332  Q
    |||| ||||||||||||||||||||||||||||| | |||  || ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  24995623 atgtttttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgactt 24995524  T
Q  333 ggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtta 432  Q
    | ||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |    
T  24995523 gatttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtca 24995424  T
Q  433 gttctgtgacttaagttggtttttgggctctgtg 466  Q
    ||||| ||||| ||||||||||||||||| ||||    
T  24995423 gttctttgactcaagttggtttttgggctttgtg 24995390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 236 - 466
Target Start/End: Original strand, 9519355 - 9519585
Alignment:
Q  236 tctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggt 335  Q
    |||||||||||||||||||||||||||||||   | |  || ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |    
T  9519355 tctttcgtcttacatattgtgtgctggttttcagtaggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgat 9519454  T
Q  336 ttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||| ||| ||||    
T  9519455 ttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagtt 9519554  T
Q  436 ctgtgacttaagttggtttttgggctctgtg 466  Q
    || ||||| ||||||||||||||||| ||||    
T  9519555 ctttgactcaagttggtttttgggctttgtg 9519585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 32066524 - 32066290
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| | |||  || ||| ||||| || |||||| ||| ||||||||||| ||||||||||||||||||    
T  32066524 catgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggctttgagatcgggattcggggtctagttgcaatctttgtttgact 32066425  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||| |||     
T  32066424 tgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtc 32066325  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    || ||| |||||  |||||||||||||||| ||||    
T  32066324 agctctttgactccagttggtttttgggctttgtg 32066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 37987087 - 37986853
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| | |||  || ||| ||||| ||||||||| | ||||||||||||| |||| ||||| |||||||    
T  37987087 catgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcggtagtcggggtctagttgcattctttatttgact 37986988  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| || |||| ||||||| ||||||||| |||     
T  37986987 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtc 37986888  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||||||||| ||| ||||    
T  37986887 agttctttgactcaagttggtttttgtgctttgtg 37986853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 36630689 - 36630918
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||| ||||||| | | |  || ||| ||||| ||||||||| |||| || ||||||||||||||||||||||||||    
T  36630689 catgtctttcgtcttacatattgtgtgttggttttcggtaggccggttcatttggcttcgagatcgggagacgaggtctagctgcaatctttgtttgact 36630788  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||| || |||||||||  ||     
T  36630789 tgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtc 36630888  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| |||||  |||| |||||||||||    
T  36630889 agttctttgactctagtttgtttttgggct 36630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 328 - 459
Target Start/End: Complemental strand, 31207494 - 31207364
Alignment:
Q  328 gacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgga 427  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||     
T  31207494 gacttgatttggtttttctctggtgtaccaggggcgag-ggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 31207396  T
Q  428 agttagttctgtgacttaagttggtttttggg 459  Q
    ||| |||||| ||||| ||||||| |||||||    
T  31207395 agtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 10248725 - 10248577
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| ||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| ||| |||| ||| ||||||| || |    
T  10248725 ttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcc 10248627  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || | | |||||||||||||||||||||| | ||||||| ||| ||||||    
T  10248626 taaaatttggtggaccgatcacttttgattcaagatcgggagtcagttct 10248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 461
Target Start/End: Complemental strand, 15821497 - 15821379
Alignment:
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgac 442  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||| ||| |||||||||| | ||||||||||||| ||||||||| ||| || ||| ||||    
T  15821497 ttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgac 15821398  T
Q  443 ttaagttggtttttgggct 461  Q
    ||| |||||||||||||||    
T  15821397 ttatgttggtttttgggct 15821379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 466
Target Start/End: Complemental strand, 16457562 - 16457456
Alignment:
Q  359 gggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    ||||||| |||| |||||||||||| ||||||||| |||||| ||||||||||||||| ||||||||| ||| |||||| ||||| |||||||||||| |    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttag 16457464  T
Q  459 gctctgtg 466  Q
    ||| ||||    
T  16457463 gctttgtg 16457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 31210420 - 31210319
Alignment:
Q  232 catgtctttcgtcttacatatt-gtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    |||||||||||||||||||||| ||| ||||||||| | |||  || ||| ||||| ||| ||||| |||||| ||||||||||||||||||||||||||    
T  31210420 catgtctttcgtcttacatatttgtgcgctggttttcggtgggccggttcatttggcttcaagatcgggagtcagggtctagctgcaatctttgtttgac 31210321  T
Q  331 tt 332  Q
    ||    
T  31210320 tt 31210319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 12898378 - 12898269
Alignment:
Q  357 gggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggttttt 456  Q
    ||||||||| ||||||||  |||||||||| ||||||||||||  ||||||||||||||| ||||||| | ||| |||| | | ||| |||||||||||     
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttg 12898279  T
Q  457 gggctctgtg 466  Q
    ||||| ||||    
T  12898278 gggctttgtg 12898269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 458
Target Start/End: Complemental strand, 17657173 - 17657005
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| | |||||| |||||||  |||| | || |||||| |||||||| |||||||||   ||| |||||||| |||| ||||  |    
T  17657173 ttcgagatcgggagtcggtggctagctacaatctta-tttggcgtgatttggtgtttctctgatgtaccgggat-gaggggtgcccttctaagttggacc 17657076  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    || ||| ||||||  |||||||||||||| ||||||||| ||| |||||| || || ||||| | ||||||    
T  17657075 taaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 20138448 - 20138512
Alignment:
Q  402 ccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||||||||||||  |||||||| ||| |||||| ||||||| ||||||||||||||| ||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 20138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 30236247 - 30236152
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||||||||||| ||||||||  || |||||||| || |||||||  |  ||||||||||  ||||| |||||||| ||||||||| ||| ||||||    
T  30236247 tttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttct 30236152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 41893474 - 41893396
Alignment:
Q  387 ctatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||||||||||| || | |||||||||| ||||||||| ||| |||||| || || ||||| ||||||||||| ||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggctttgtg 41893396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 38306113 - 38306347
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| |||||||||||||||||||||||| | |||  || ||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  38306113 catgtctttcatcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagaacgggagtcggggtctagctgcaatctttgtttgact 38306212  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||     
T  38306213 tgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtc 38306312  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||||||||||||| ||||    
T  38306313 agttctttgactcaagttggtttttgggctttgtg 38306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 232 - 469
Target Start/End: Complemental strand, 47326114 - 47325877
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| |||||||||||||||||||||||| |||||  || ||| ||||| ||||||||| |||||||||||||||| ||||||||||||| |||    
T  47326114 catgtctttcttcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcggggtctagcagcaatctttgtttaact 47326015  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||  |||||||| |||     
T  47326014 tgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtc 47325915  T
Q  432 agttctgtgacttaagttggtttttgggctctgtgctg 469  Q
    || ||| ||||| ||||||||||||||||| |||||||    
T  47325914 agctctttgactcaagttggtttttgggctttgtgctg 47325877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 3419885 - 3419656
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| |  |   || ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  3419885 catgtctttcgtcttacatattgtgtgctggttttcggcgagccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgact 3419786  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||| |||||| | ||||||||||||| ||||||||| |||     
T  3419785 tgatttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtc 3419686  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    || ||| ||||| |||||||||||||||||    
T  3419685 agctctttgactcaagttggtttttgggct 3419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 5860517 - 5860283
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| |||||  || ||| ||||| ||||||||| ||||||| |||||| |||||||||||||||| ||    
T  5860517 catgtctttcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcgaggtctatctgcaatctttgtttggct 5860418  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
       ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||| |||     
T  5860417 gaatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtc 5860318  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    | |||| ||||  ||||||||||||||||| ||||    
T  5860317 aattctttgacgcaagttggtttttgggctttgtg 5860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 25160667 - 25160896
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||| |||||||||||||||| |||||||| | |||   ||||| ||||| || | |||| ||||||||||||||| ||| || |||||||||||    
T  25160667 catgtcttttgtcttacatattgtgtactggttttcggtgggatgattcatttggctttgggatcgggagtcggggtctagttgctatttttgtttgact 25160766  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||     
T  25160767 tggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtc 25160866  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |  |||   | |||||||||||||||||||    
T  25160867 aaatcttgaaattaagttggtttttgggct 25160896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 238 - 458
Target Start/End: Original strand, 10244041 - 10244260
Alignment:
Q  238 tttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggttt 337  Q
    ||||||||||||||||||||||||||||| | | |   | ||| ||||| ||||||||| ||||||||| ||||| |||||||||||||||| | | |||    
T  10244041 tttcgtcttacatattgtgtgctggttttcggttggctggttcatttggcttcgagatcgggagtcgggatctagttgcaatctttgtttga-tagattt 10244139  T
Q  338 ggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  10244140 ggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttct 10244239  T
Q  438 gtgacttaagttggtttttgg 458  Q
     ||||| ||||| ||||||||    
T  10244240 ttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 461
Target Start/End: Original strand, 3866972 - 3867197
Alignment:
Q  235 gtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttgg 334  Q
    ||||||||||||||||||||||| |||||||  | ||| ||||||  ||| | |||||||||  |||||||||||||||| ||||||||||||||||||     
T  3866972 gtctttcgtcttacatattgtgtcctggtttcgg-tgggtcgattacttttgcttcgagatcgagagtcggggtctagctacaatctttgtttgacttga 3867070  T
Q  335 tttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagt 434  Q
    | ||||||||||||||||||||| ||||||  |||| |||||||||||||||||| | | |||||| | ||||||||||||| ||||| ||| ||| |||    
T  3867071 tatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagt 3867170  T
Q  435 tctgtgacttaagttggtttttgggct 461  Q
    ||| ||||| |||||||||||||||||    
T  3867171 tctttgactcaagttggtttttgggct 3867197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 299 - 457
Target Start/End: Complemental strand, 41089910 - 41089752
Alignment:
Q  299 gagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggt 398  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  41089910 gagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggt 41089811  T
Q  399 ggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttg 457  Q
    |||||||||||||||||| |||||| || ||| || ||| ||||| |||||||||||||    
T  41089810 ggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 245 - 466
Target Start/End: Original strand, 37794865 - 37795075
Alignment:
Q  245 ttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggttttt 344  Q
    |||||||||||||||||||||| | |||  || ||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||        
T  37794865 ttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatttggt---- 37794960  T
Q  345 ctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgactt 444  Q
           |||||||||||||| |||||||||||||||||||| |||||| |||||| ||| ||| ||||||| ||||||||| ||| |||||| ||| |     
T  37794961 -------gtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtc 37795053  T
Q  445 aagttggtttttgggctctgtg 466  Q
    ||||||||||||||||| ||||    
T  37795054 aagttggtttttgggctttgtg 37795075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 232 - 460
Target Start/End: Original strand, 33434962 - 33435189
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||| ||||| |||||||||||||| ||||||  | |||  |||||  ||| | ||||||||| | |||| |||||||| || |||||||||||  ||    
T  33434962 catgtcattcgtattacatattgtgtgttggtttccggtgggccgattacttttgcttcgagatcggtagtccgggtctagttgtaatctttgtttagct 33435061  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||   |||||||||||||| ||||||||| |||     
T  33435062 tgatttggtttt-ctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtc 33435160  T
Q  432 agttctgtgacttaagttggtttttgggc 460  Q
    |||||| || || ||||| |||| |||||    
T  33435161 agttctttgtctcaagttcgtttgtgggc 33435189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 461
Target Start/End: Original strand, 34389814 - 34390043
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    |||||||| ||||| |||||||||||||||||| | ||||||  |  ||  ||| | ||||||||| | ||| || |||||| ||||||| |  ||||||    
T  34389814 tcatgtctatcgtcgtacatattgtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgac 34389913  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    ||| | |||| || ||||||||||| ||||| |||  |||||||||| |||||||  || |||||||||| ||||||||||||||| ||||||||| |||    
T  34389914 ttgatatggtgtt-ctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagt 34390012  T
Q  431 tagttctgtgacttaagttggtttttgggct 461  Q
     || ||| || ||||||||||||||||||||    
T  34390013 cagctctttggcttaagttggtttttgggct 34390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 6584877 - 6584990
Alignment:
Q  348 tggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaag 447  Q
    ||||||||||| |||||| ||||||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||| ||| || ||| || ||||||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaag 6584976  T
Q  448 ttggtttttgggct 461  Q
    ||||||||||||||    
T  6584977 ttggtttttgggct 6584990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 461
Target Start/End: Complemental strand, 35745998 - 35745827
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| | ||| || | ||||| |||||||| |||||||||| | |||| || ||||| ||||||||||||||| |||||||| ||||||| || |    
T  35745998 ttcgagatcggaagttggtgactagcagcaatctt-gtttgacttgatatggtgtt-ctctgatgtaccgggggcgaggggtgccctactaattttgttc 35745901  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || |||||| ||| | ||||||||||||| ||||||||||||| |  ||| || || |||||||||||||||||    
T  35745900 taaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggct 35745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 44755546 - 44755662
Alignment:
Q  298 ggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctgg 397  Q
    |||||||| |||||||||| || |||||||||| || |||||| |||||||||||||||| ||  ||| |||||||| || ||||||| ||| |||||||    
T  44755546 ggagtcggtgtctagctgctat-tttgtttgacgtgatttggtgtttctctggtgtaccgtggt-gaggggtgcccttctgatttggtcctaaagtctgg 44755643  T
Q  398 tggaccgatcacttttgat 416  Q
    ||| |||||||||||||||    
T  44755644 tgggccgatcacttttgat 44755662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 449
Target Start/End: Original strand, 16954527 - 16954722
Alignment:
Q  253 tgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtg 352  Q
    |||||||||||||  |||||  |||||  ||| | ||| |||||  |||| || |||||||||||||||| ||| | |  | |||||| |||||||||||    
T  16954527 tgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttgg-cgcgatttggtctttctctggtg 16954625  T
Q  353 taccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagtt 449  Q
    || | | || ||| |||||||| || ||||||| ||| |||||||| ||||||||||||||| | |||||||| |||| |||||| ||||| |||||    
T  16954626 tatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 437
Target Start/End: Complemental strand, 6716905 - 6716760
Alignment:
Q  291 gagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactat 390  Q
    |||||| |||||||| ||||||||||||||||  |||| |||| |||| | |||||||||||||||| | | ||| |||||||| || ||||  |  ||     
T  6716905 gagatcgggagtcggtgtctagctgcaatctta-tttggcttgatttgatgtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataa 6716807  T
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||| | ||||||||||||||| ||||||||| ||| ||||||    
T  6716806 agtctggttggccgatcacttttgattcgagatcgggagtcagttct 6716760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 1320703 - 1320851
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| ||||| || ||||||||| ||| |||||||| |    |||||| |||||||| |||| |||||| ||| ||||||||  | |||||||      
T  1320703 ttcgagatcgggagttggtgtctagctgtaat-tttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggtca 1320801  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || |||||||||| ||||||||||||||| | | ||||||||| ||||||    
T  1320802 taaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttct 1320851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 42533376 - 42533287
Alignment:
Q  337 tggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    |||| ||||||||||| | |||||| ||| |||||||| || ||||||| ||| |||||||||| | ||||||||||||| |||||||||    
T  42533376 tggtgtttctctggtgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgg 42533287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 449
Target Start/End: Complemental strand, 16829146 - 16828948
Alignment:
Q  250 tattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctg 349  Q
    ||||||||||||||||  ||||| ||||||  ||| | ||| ||||   |||| || ||||| |||||||||| ||| | |  | |||||| |||||||     
T  16829146 tattgtgtgctggtttccgatgggtcgattacttttgcttccagattgagagttggtgtctacctgcaatcttggttgg-cgcgatttggtgtttctcta 16829048  T
Q  350 gtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagtt 449  Q
    ||||| | |||| ||| |||||||| || ||||||| ||| |||||||| | | ||||||||||| | |||||||| |||| |||||| ||||| |||||    
T  16829047 gtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 426
Target Start/End: Original strand, 8745062 - 8745199
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| | || ||| ||||||||||||| || |||||   || | |||| ||||||||||| |||| ||| ||| |||| ||| || ||||||| |    
T  8745062 ttcgagatcggaaggcggtgtctagctgcaatgtt-gtttggtgtgatctggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcc 8745160  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    || | |||||||| ||||||||||||||| |||||||||    
T  8745161 taaattctggtgggccgatcacttttgattcgagatcgg 8745199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 3478328 - 3478409
Alignment:
Q  356 cgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||| ||| |||||||| ||  |||||| ||| ||| |||||| ||||||||||||||| ||||||||| ||||||||||    
T  3478328 cgggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttct 3478409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 466
Target Start/End: Complemental strand, 44353623 - 44353559
Alignment:
Q  402 ccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||||||||||||  |||||||| ||| |||||| ||||||| ||||||||||||||| ||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 44353559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 13311747 - 13311896
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| ||||| || ||||| ||||| ||||  |||||||   || | | ||||||||||| |||||||   || |||||||  ||  ||||||      
T  13311747 ttcgagatcgggagttggtgtctaactgcattcttattttgactgacttcgttgtttctctggtggaccggggataaggggtgcccgtctggtttggtca 13311846  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    | ||||||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  13311847 tgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 13311896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 24324957 - 24324833
Alignment:
Q  301 gtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtgg 400  Q
    ||||| |||||| ||||||||| |||||   || |||||| ||||| |||||||||||||   || |||||||| || |||||||  || ||| ||||||    
T  24324957 gtcggtgtctagttgcaatctt-gtttggtgtgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgg 24324859  T
Q  401 accgatcacttttgatccgagatcgg 426  Q
     ||||||| ||||||| |||||||||    
T  24324858 gccgatcaattttgattcgagatcgg 24324833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 27993606 - 27993562
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||||||||||||||||||| ||||||||| || |||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatcgggagctagtt 27993562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 35206763 - 35206719
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||| ||||||||||||||||||||||||| || |||||    
T  35206763 agtctggtgggccgatcacttttgatccgagatcgggagctagtt 35206719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 25153231 - 25153265
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcg 425  Q
    |||||||||||||||||||||||||| ||||||||    
T  25153231 agtctggtggaccgatcacttttgattcgagatcg 25153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 9428186 - 9428129
Alignment:
Q  380 tttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||| || ||||||||||  ||||||||||||||| ||||||| ||||| ||||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttct 9428129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 17802885 - 17802848
Alignment:
Q  392 gtctggtggaccgatcacttttgatccgagatcggaag 429  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcggaag 17802848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 11379246 - 11379162
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||| |||| |||   | |||||||| ||||||||||  | ||||||||||  |||||| |||||||| |||||||||    
T  11379246 tttctctggtggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgg 11379162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 38485518 - 38485602
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||||||||| || |||||  || |||||||| || | || || ||  |||||||||| ||||||||||||||| |||||||||    
T  38485518 tttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgg 38485602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 46262189 - 46262145
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||| ||||||||||||||| ||||||||| || |||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggagctagtt 46262145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 39339094 - 39338860
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||| | |||  |  ||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  39339094 catgtctttcgtcttacatattgtgtgctggttttcggtgggccagttcatttggcttcgagatcgggagtcggggtctagctgcaatatttgtttgact 39338995  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||     
T  39338994 tgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtc 39338895  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| ||||| ||||||||||||||||| ||||    
T  39338894 agttctttgactcaagttggtttttgggctttgtg 39338860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 10523949 - 10524187
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||| |||||||||||||||||||||||| | |||| || ||| ||||| ||||||||| ||||||||| ||||| ||||||||||||||||||    
T  10523949 catgtctttcatcttacatattgtgtgctggttttcggtggaccggttcatttggcttcgagatcgggagtcgggctctagttgcaatctttgtttgact 10524048  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||| ||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||| |||     
T  10524049 tgatttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtc 10524148  T
Q  432 a----gttctgtgacttaagttggtttttgggctctgtg 466  Q
    |     |||| ||||| ||||||||||||||||| ||||    
T  10524149 aatatattctttgactcaagttggtttttgggctttgtg 10524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 32488770 - 32488645
Alignment:
Q  19 acaacgtctatgaagacatgatatccaaataatattgtttttaacgttgtattgttattagaagttgagtatttaactgtgaaatatattttaatattta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32488770 acaacgtctatgaagacatgatatccaaataatattgtttttaacgatgtattgttattagaagttgagtatttaattgtgaaatatattttaatattta 32488671  T
Q  119 aaagagtattttcatttcttaatatt 144  Q
    |||||||||||||||||||| |||||    
T  32488670 aaagagtattttcatttcttgatatt 32488645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 32160496 - 32160397
Alignment:
Q  26 ctatgaagacatgatatccaaataatattgtttttaacgttgtattgttattagaagttgagtatttaactgtgaaatatattttaatatttaaaagagt 125  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  32160496 ctatgaagacatgatatccaaataatattgtttttaatgttgtattgttgttagaagttgagtatttaactgtgaaatatactttaatatttgaaagagt 32160397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 461
Target Start/End: Original strand, 7874144 - 7874372
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    |||||||| |||||||| ||||||||||||||| |  | |||  || ||  ||| | ||||||||| ||||| || |||||||||||||| | | |||||    
T  7874144 tcatgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct-gcttgac 7874242  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    ||| | |||| || |||| |||||||| ||||||  ||||||||||| ||||||| ||| ||||||||||  |||||||||||||| ||||||||| |||    
T  7874243 ttgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagt 7874341  T
Q  431 tagttctgtgacttaagttggtttttgggct 461  Q
     || ||| ||||| |||||||||||||||||    
T  7874342 cagctctttgactcaagttggtttttgggct 7874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 457
Target Start/End: Original strand, 387129 - 387250
Alignment:
Q  335 tttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagt 434  Q
    |||||||||||||||||  ||||||| |||| ||||||||||||||||||||||| |||||||||| | |||||||||||||  |||||||| ||| | |    
T  387129 tttggtttttctctggtacaccgggg-cgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaat 387227  T
Q  435 tctgtgacttaagttggtttttg 457  Q
    ||| ||||| |||||||||||||    
T  387228 tctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 425
Target Start/End: Original strand, 17105263 - 17105457
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    ||||||||||| |||||||||||||||||||||||  | ||| ||| ||  ||| | || |||||  |||||||| |||||||||||| ||| |||||||    
T  17105263 tcatgtctttcatcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaacctt-gtttgac 17105361  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcac-ttttgatccgagatcg 425  Q
    ||  || ||| ||||| ||||||||| |||| ||| |||||||| || ||||||||||  |||||| ||| |||||||| ||||||| ||||||||    
T  17105362 ttaattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatcg 17105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 14405162 - 14405279
Alignment:
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgac 442  Q
    ||||||||||||||||||||||| |||||  || | ||||||| ||| |||||||||| ||||||||||||||| ||||||||| ||| || ||| || |    
T  14405162 ttctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc 14405260  T
Q  443 ttaagttggtttttgggct 461  Q
    | |||||||||||||||||    
T  14405261 tcaagttggtttttgggct 14405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 14106686 - 14106559
Alignment:
Q  298 ggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctgg 397  Q
    |||||||| | |||||||||||| | |||||||||| |||||| || ||||  ||||||  ||||||| ||||||||||| ||||||| ||| |||||||    
T  14106686 ggagtcggtgactagctgcaatcct-gtttgacttgatttggtgttcctctcatgtacccagggcgaggggtgccctgctgatttggtcctaaagtctgg 14106588  T
Q  398 tggaccgatcacttttgatccgagatcgg 426  Q
    ||| ||||||||||||||| | |||||||    
T  14106587 tgggccgatcacttttgattcaagatcgg 14106559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 32184997 - 32184882
Alignment:
Q  19 acaacgtctatgaagacatgatatccaaataatattgtttttaacgttgtattgttattagaagttgagtatttaactgtgaaatatattttaatattta 118  Q
    ||||| |||| ||||||||||| ||||||||||||| ||||||  |||||||| || ||| ||||||||||||||| ||||||||||| |||| |||||     
T  32184997 acaacttctaggaagacatgatgtccaaataatatt-tttttattgttgtattattgttataagttgagtatttaattgtgaaatatactttagtatttg 32184899  T
Q  119 aaagagtattttcattt 135  Q
    ||||||| |||| ||||    
T  32184898 aaagagttttttgattt 32184882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 459
Target Start/End: Original strand, 1269391 - 1269562
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||  ||||||||||| ||||  |||| |||  |||| | |||||||||| ||||   || ||| |||||||| || |||| || |    
T  1269391 ttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcc 1269490  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttggg 459  Q
    || |||||||||| ||||||||||||||| ||||||||||||| |||||| || || ||||| | |||||||    
T  1269491 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 32179345 - 32179271
Alignment:
Q  45 aaataatattgtttttaacgttgtattgttattagaagttgagtatttaactgtgaaatatattttaatatttaa 119  Q
    |||||||||||||||||| ||||||||| | ||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  32179345 aaataatattgtttttaatgttgtattgctgttataagttgaatatttaattgtgaaatatactttaatatttaa 32179271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 461
Target Start/End: Complemental strand, 10173753 - 10173578
Alignment:
Q  286 gtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggttt-ggtttttctctggtgtaccgggggcgagcggtgccctgctaatttgg 384  Q
    |||||| |||| | |||||| |||||||||||||||| ||||| |||| |   ||| ||||||||||||||| | || ||  ||||| ||  |  |||||    
T  10173753 gtttcgggatcggaagtcggtgtctagctgcaatctt-gtttggcttgataacggtgtttctctggtgtaccagaggtgaagggtgctcttttgttttgg 10173655  T
Q  385 tactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    | ||| ||||| |||| ||||||||||||||| ||||||||||||| |||| | || || ||||| | |||||||||    
T  10173654 tcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggct 10173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 41086905 - 41086825
Alignment:
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatc 424  Q
    |||||||||||||| |||| ||| |||||||| || |||||||  |||||||||||||  | |||||||||||| |||||||    
T  41086905 ttctctggtgtaccaggggtgag-ggtgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 13337285 - 13337352
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    |||||| ||| ||||||||||||||| ||| ||||||||| |||||| ||||| ||||| | ||||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 4471934 - 4472004
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    |||||||||| |||||| | |||||| ||||||||| ||| |||||| ||| | ||||| |||||||||||    
T  4471934 agtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggct 4472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 16952611 - 16952569
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatgga 273  Q
    ||||||| || ||||||||||||||||||||||||| ||||||    
T  16952611 tcatgtcatttgtcttacatattgtgtgctggttttcgatgga 16952569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 17023276 - 17023234
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatgga 273  Q
    ||||||| || ||||||||||||||||||||||||| ||||||    
T  17023276 tcatgtcatttgtcttacatattgtgtgctggttttcgatgga 17023234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 17060582 - 17060540
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatgga 273  Q
    ||||||| || ||||||||||||||||||||||||| ||||||    
T  17060582 tcatgtcatttgtcttacatattgtgtgctggttttcgatgga 17060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 17079022 - 17079064
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatgga 273  Q
    ||||||| || ||||||||||||||||||||||||| ||||||    
T  17079022 tcatgtcatttgtcttacatattgtgtgctggttttcgatgga 17079064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 22885203 - 22885157
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  22885203 agtctggtgggccgatcacttttgattcgagatcgggagtcagttct 22885157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 37770760 - 37770686
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgat 416  Q
    |||||||||||||||| ||| ||| |||||||  || ||||||| |||  || |||||| |||||||||||||||    
T  37770760 tttctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgat 37770686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 32176629 - 32176588
Alignment:
Q  76 ttagaagttgagtatttaactgtgaaatatattttaatattt 117  Q
    ||||||||||||||||||| |||||| |||| ||||||||||    
T  32176629 ttagaagttgagtatttaattgtgaattatactttaatattt 32176588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 9560854 - 9560814
Alignment:
Q  395 tggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||||||||||||||| ||||||||| || |||||    
T  9560854 tggtggaccgatcacttttgattcgagatcgggagctagtt 9560814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 8254879 - 8255108
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||| ||||||| | |||  || ||| ||||| ||||||||| ||||||| |||||||||| ||||||||||| |||    
T  8254879 catgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcact 8254978  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||     
T  8254979 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtc 8255078  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| ||||| |||||||||||||||||    
T  8255079 agttctttgactcaagttggtttttgggct 8255108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 8268297 - 8268526
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||| ||||||| | |||  || ||| ||||| ||||||||| ||||||| |||||||||| ||||||||||| |||    
T  8268297 catgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcact 8268396  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||     
T  8268397 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtc 8268496  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| ||||| |||||||||||||||||    
T  8268497 agttctttgactcaagttggtttttgggct 8268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 232 - 459
Target Start/End: Original strand, 30964293 - 30964520
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||| ||||||||||||||||| |||||  || ||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  30964293 catgtctttcgtcttacttattgtgtgctggttttcgatgggccggttcatttggcttcgagatcggaagtcggggtctagctgcaatctttgtttgact 30964392  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||| || |||||| |||     
T  30964393 tgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtc 30964492  T
Q  432 agttctgtgacttaagttggtttttggg 459  Q
     ||||| ||||| |||||||||||||||    
T  30964493 cgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 4305577 - 4305811
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||| |||||||||||||||| |||||||| | |||  || ||| ||||| ||||||||| |||||||||| |||| ||||||||||||||||||    
T  4305577 catgtcttttgtcttacatattgtgtactggttttcggtgggccggttcatttggcttcgagatcgggagtcgggggctagttgcaatctttgtttgact 4305676  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
     | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  4305677 ggatttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagtt 4305776  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |||||| || || |||||||||||| |||| ||||    
T  4305777 agttctttgtctcaagttggtttttaggctttgtg 4305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 461
Target Start/End: Complemental strand, 31050833 - 31050662
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||| | |||||||| | |||||||||||| | |||||||||| | |||| || || || ||||||||||||||| |||||||| || ||||||| |    
T  31050833 ttcgagaccgggagtcggtgactagctgcaatcct-gtttgacttgatatggtgtt-ctttgatgtaccgggggcgaggggtgccctactgatttggttc 31050736  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || |||||||||| ||||||||||||||| |||||||||||||||| ||| ||  || ||||||||||||||||    
T  31050735 taaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggct 31050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 459
Target Start/End: Complemental strand, 30167737 - 30167566
Alignment:
Q  287 tttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggta 386  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||| ||| | |||||| || ||| ||||||  ||| ||||||||||  ||||||||    
T  30167737 tttcgagatcgggagtcggggtctagctacaatctttgtttgatttgatttaggttttctttgatgtgccggggt-gaggggtgccctgcctatttggta 30167639  T
Q  387 ctatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttggg 459  Q
     |||||||  ||||  |||||||||||||| ||||||||| |||  ||||| ||||| |||||| ||||||||    
T  30167638 ttatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 288 - 459
Target Start/End: Complemental strand, 53823593 - 53823423
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| ||||| |||||||||| | ||| ||||  ||||| ||||||||||||||||| || ||| |||||||| || |||||||      
T  53823593 ttcgagatcgggagtcggtgtctaactgcaatctt-gcttggcttgacttggtgtttctctggtgtaccggaggtgaggggtgcccttctgatttggtca 53823495  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttggg 459  Q
    || ||||||||||||| |||||||||||| ||||||||| ||| |||||| || || ||||| | |||||||    
T  53823494 taaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 461
Target Start/End: Original strand, 25753081 - 25753253
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| |||||||||||||||| ||||| | || | |||| ||||||||||||||||| || |||  ||||||  || ||||||| |    
T  25753081 ttcgagatcgggagtcggtgtctagctgcaatctt-gtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatttggtcc 25753179  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || ||||||||||  |||||||||||||| ||||||||| ||| |||||| || || ||||| | |||||||||    
T  25753180 taaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggct 25753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 2825712 - 2825829
Alignment:
Q  307 gtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgat 406  Q
    |||||||||||||| | |||||||||| | |||| || ||||||||||||| ||||||| ||||| ||||| ||||||| ||| |||| ||||| |||||    
T  2825712 gtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgat 2825809  T
Q  407 cacttttgatccgagatcgg 426  Q
    || ||||||| |||||||||    
T  2825810 catttttgattcgagatcgg 2825829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 426
Target Start/End: Complemental strand, 39421185 - 39421048
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| ||| |||| |||||||||||||||| ||||| | || |||||| |||||||  ||||| | ||| ||| |||||||| || || ||||      
T  39421185 ttcgagatcgggaatcggtgtctagctgcaatctt-gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggtct 39421087  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    ||||| ||||||| ||||||||||||||| |||||||||    
T  39421086 tatagcctggtgggccgatcacttttgattcgagatcgg 39421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 19815396 - 19815248
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    |||||||||  ||||||| |||||||||||||||| ||||| |||| | | || ||| ||||||  |||||||| ||| |||||||| ||  |||||| |    
T  19815396 ttcgagatcgagagtcggtgtctagctgcaatctt-gtttggcttgatattgtatttttctggttgaccgggggtgaggggtgcccttctgttttggtcc 19815298  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || |||||||||||||||| |||||| || ||||||| | ||| ||||||    
T  19815297 taaagtctggtggaccgattactttttattcgagatcaggagtcagttct 19815248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 21387274 - 21387228
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  21387274 agtctggtggaccgatcacttttgattcgagatcggaagtcagttct 21387228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 19673010 - 19673124
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||| | |||||||||||||| ||||||| |||| | || | ||||||||||  | |||||| ||| |||||||| ||  |||||| |    
T  19673010 ttcgagatcgggagtcagtgtctagctgcaatc-ttgtttggcttgatatgatatttctctggttgatcgggggtgaggggtgcccttctgttttggtcc 19673108  T
Q  388 tatagtctggtggacc 403  Q
    || |||||||||||||    
T  19673109 taaagtctggtggacc 19673124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 35800476 - 35800546
Alignment:
Q  367 ggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||| || ||||||| ||  ||||||||| ||||||| |||||||| ||||||||||||| ||||||    
T  35800476 ggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttct 35800546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 437
Target Start/End: Complemental strand, 22811367 - 22811184
Alignment:
Q  252 ttgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggt 351  Q
    ||||||||||||||| | ||| ||| ||  ||| | ||||||||| | | | || |||||| |||||| ||||||||   || |||||| ||||||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaat-tttgtttggtgtgatttggtgtttctctggt 22811269  T
Q  352 gtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||| | |||| |||  ||||||| || |||||||  || |||||||||| ||||||| |||| || ||||||||| ||| ||||||    
T  22811268 gtatc-ggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttct 22811184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 53756767 - 53756811
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||    
T  53756767 agtctggtgggccgatcacttttgattcgagatcggaagctagtt 53756811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 38637305 - 38637238
Alignment:
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttt 455  Q
    |||||||||| || ||||||||||||||| ||||||||| ||| | |||| || ||||||| ||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 46698904 - 46698809
Alignment:
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||||| ||||| |||| ||| | | |||||||| || ||||||| || ||||||||||| |||||  |||||||| ||||||||| ||| ||||||    
T  46698904 tttctttggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttct 46698809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 35341391 - 35341341
Alignment:
Q  408 acttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    ||||||||||||||||||||||| || ||| || || ||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 12296038 - 12296118
Alignment:
Q  242 gtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctt 322  Q
    ||||||||||||||||||||| || || |||  |||||  ||| | ||||||||| ||||| || ||||||||||| ||||    
T  12296038 gtcttacatattgtgtgctggattctggtgggccgattacttttgcttcgagatcgggagttggcgtctagctgcattctt 12296118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 698213 - 698447
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||||||||  |||  || ||| ||||| ||||||||| |||||| |||||||| ||||||||||||||||||    
T  698213 catgtctttcgtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgact 698312  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||     
T  698313 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtc 698412  T
Q  432 agttctgtgacttaagttggtttttgggctctgtg 466  Q
    |  ||| ||||| ||||||||||||||||| ||||    
T  698413 aactctttgactcaagttggtttttgggctttgtg 698447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 18593095 - 18593324
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    |||||||||||| ||||||||||||||||| |||| | |||  || ||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  18593095 catgtctttcgttttacatattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtttgact 18593194  T
Q  332 tggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagtt 431  Q
    || |||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||| | |||| | ||||||||||||| ||||||||| ||||    
T  18593195 tgatttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagtt 18593294  T
Q  432 agttctgtgacttaagttggtttttgggct 461  Q
    |||||| ||||| |||||||||||||||||    
T  18593295 agttctttgactcaagttggtttttgggct 18593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 236 - 461
Target Start/End: Original strand, 34377954 - 34378179
Alignment:
Q  236 tctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggt 335  Q
    |||||||||||| |||| ||||||||||||| | | |  || ||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  34377954 tctttcgtcttatatatcgtgtgctggttttcggtaggccggttcatttggcttcgagatcgggagtcgaggtctagctgcaatctttgtttgacttgat 34378053  T
Q  336 ttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||| |||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||| ||||    
T  34378054 ttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 34378153  T
Q  436 ctgtgacttaagttggtttttgggct 461  Q
    || ||||  |||||||||||||||||    
T  34378154 ctttgacacaagttggtttttgggct 34378179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 461
Target Start/End: Original strand, 29087383 - 29087562
Alignment:
Q  282 tttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatt 381  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||| ||||| |||||| ||    
T  29087383 tttggcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggcgaggggtgctctgctattt 29087482  T
Q  382 tggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    |||| ||| |||||||||||| |||| |||||||| ||||||| | ||| |||||| ||| | || ||||||| ||||||    
T  29087483 tggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggct 29087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 242 - 437
Target Start/End: Complemental strand, 7392249 - 7392055
Alignment:
Q  242 gtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtt 341  Q
    ||||||| | ||||||| |||| | ||||||| || ||  ||| | ||||||||| ||||| || |||||||||||||||| ||||| |||| ||||||     
T  7392249 gtcttactttttgtgtgttggtatctgatggaccggttacttttgcttcgagatcgggagttggtgtctagctgcaatctt-gtttggcttgatttggtg 7392151  T
Q  342 tttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||| ||||||| ||| ||| |||||||| || ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  7392150 tttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttct 7392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 426
Target Start/End: Complemental strand, 13954405 - 13954269
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    |||||||||  ||||||| ||||||||||||||||  ||||||||| ||| || ||||||||||||||||  || ||| |||||| | || ||||||| |    
T  13954405 ttcgagatcaagagtcggtgtctagctgcaatctta-tttgacttgattttgtgtttctctggtgtaccgaaggtgaggggtgcctt-ctgatttggtcc 13954308  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcgg 426  Q
    || |||||||||| ||||||||||||||| |||||||||    
T  13954307 taaagtctggtgggccgatcacttttgattcgagatcgg 13954269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 437
Target Start/End: Complemental strand, 33259050 - 33258906
Alignment:
Q  292 agatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactata 391  Q
    ||||| ||||||||  ||||||| ||||||| ||||| |  | |||||| ||||||||||||||||  || ||| |||| ||| ||  |||||| ||| |    
T  33259050 agatcgggagtcggtatctagctacaatctt-gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaa 33258952  T
Q  392 gtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttct 33258906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 7195410 - 7195263
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| | ||||||||||| || ||||| | || ||| || ||||||||||||||| |||  ||| |||||||| || ||||||       
T  7195410 ttcgagatcgggagtcggtggctagctgcaatatt-gtttggcgtgatttagtgtttctctggtgtaccagggt-gaggggtgcccttctgatttggcca 7195313  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || |||||||||  ||||||||||||||| ||||||||| ||| ||||||    
T  7195312 taaagtctggtgagccgatcacttttgattcgagatcgggagtcagttct 7195263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 458
Target Start/End: Original strand, 8297377 - 8297546
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    |||||||||  |||| || ||||||||||||| |||||||  |||| |||||| ||||||| |||||||| ||| ||| |||||||| || ||||||| |    
T  8297377 ttcgagatcgagagttggtgtctagctgcaat-tttgttttgcttgatttggtgtttctctagtgtaccgagggtgaggggtgcccttctgatttggttc 8297475  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    || ||  |||||| |  || | ||||||| ||||||||| ||| |||||| || || ||||| | ||||||    
T  8297476 taaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 8297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 14302602 - 14302454
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||| | |||||||||||| ||  ||||| | || | |||| ||||||||||||| || ||| ||| | |||||| ||  |||||| |    
T  14302602 ttcgagatcgggagtccgtgtctagctgcaagcta-gtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggtcc 14302504  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || |||||||||||| ||||||||||| | |||||| || ||| ||||||    
T  14302503 taaagtctggtggactgatcacttttggttcgagattgggagtcagttct 14302454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 434
Target Start/End: Complemental strand, 26046136 - 26045991
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaa-tttggta 386  Q
    ||||||| | |||||||| | ||||||||||||||  |||| | || |||||| ||||||||||||||||||    || |||||| |  | | ||||||     
T  26046136 ttcgagaccgggagtcggtggctagctgcaatctta-tttggcgtgatttggtgtttctctggtgtaccgggtta-aggggtgcctttttgagtttggtc 26046039  T
Q  387 ctatagtctggtggaccgatcacttttgatccgagatcggaagttagt 434  Q
    ||| ||||||||| |||||||||||||||| ||||||||| |||||||    
T  26046038 ctaaagtctggtgaaccgatcacttttgattcgagatcgggagttagt 26045991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 39184256 - 39184211
Alignment:
Q  392 gtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 39184211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 22675394 - 22675324
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    |||||||||||||||||  ||||||| ||||||||| ||| |||||| || || ||||| | |||||||||    
T  22675394 agtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggct 22675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 36001 - 35772
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgact 331  Q
    ||||||||||||||||||||||||||||||| ||| | |||  || ||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  36001 catgtctttcgtcttacatattgtgtgctggctttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgact 35902  T
Q  332 tggttt-ggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    |  ||| |||||||||||||||||||||||||||| ||||||  |||||||||||  |||||||| |||| ||||||||||||||| ||||||||| |||    
T  35901 taattttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagt 35802  T
Q  431 tagttctgtgacttaagttggtttttgggct 461  Q
     | |||| |||||||||||||||||||||||    
T  35801 ca-ttctttgacttaagttggtttttgggct 35772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 3117344 - 3117579
Alignment:
Q  232 catgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgttt-gac 330  Q
    |||||||||| |||||||||||||||| |||||||   |||  || ||| ||||| ||||||||  ||||||||||||||| |||||||||||||| |||    
T  3117344 catgtctttcatcttacatattgtgtgttggttttcagtgggccggttcatttggcttcgagattgggagtcggggtctagttgcaatctttgttttgac 3117443  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |  |||||| |||||| ||||||||||||||| | ||||||| |||    
T  3117444 ttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagt 3117543  T
Q  431 tagttctgtgacttaagttggtttttgggctctgtg 466  Q
     |||||| ||||| ||||||||||||||||| ||||    
T  3117544 cagttctttgactcaagttggtttttgggctttgtg 3117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 458
Target Start/End: Complemental strand, 16510474 - 16510304
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| || ||||||||||||||||||| |    
T  16510474 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttc 16510375  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgg 458  Q
    || ||||| |||| ||||||||||||||| |||||| |  ||| |||||| | ||| ||||||||||||||    
T  16510374 taaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 291 - 461
Target Start/End: Complemental strand, 20701972 - 20701803
Alignment:
Q  291 gagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactat 390  Q
    |||||| ||| |||| ||||||||||||  |||||||| | || ||||||||||||||||||||||||||| ||| |||||||| || |||||||  | |    
T  20701972 gagatcgggattcggtgtctagctgcaaa-tttgtttggcgtgatttggtttttctctggtgtaccgggggtgaggggtgcccttctgatttggtcattt 20701874  T
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || ||||||  ||||||||||||||| ||||||||| |||||||||| || |||||||| | |||||||||    
T  20701873 agactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttttgggct 20701803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 421
Target Start/End: Complemental strand, 3880752 - 3880623
Alignment:
Q  291 gagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactat 390  Q
    |||||| |||||||| |||||||||| ||||| ||||| | || |||||| |||||||||| ||||| ||| ||| |||||||| || ||||||| |||     
T  3880752 gagatcgggagtcggtgtctagctgctatctt-gtttggcatgatttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaa 3880654  T
Q  391 agtctggtggaccgatcacttttgatccgag 421  Q
    ||| |||||| ||||||||||||||| ||||    
T  3880653 agtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 458
Target Start/End: Complemental strand, 32935556 - 32935342
Alignment:
Q  243 tcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggttt 342  Q
    |||||||||||||||||||| ||  | ||| ||| ||  ||| | || |||||| | ||| || |||||||||||||| || |||| |||| | |||| |    
T  32935556 tcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatc-ttctttggcttgttatggtgt 32935458  T
Q  343 ttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgac 442  Q
    |||| || || | |||||| ||| ||| |||| || ||||||| ||  |||||||||| |||||| |||||||| ||||||||| ||| ||||||  |||    
T  32935457 ttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggac 32935358  T
Q  443 ttaagttggtttttgg 458  Q
    | ||||| | ||||||    
T  32935357 tcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 7546499 - 7546455
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    |||||||||||||||||||||||||| |||||||||||| |||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatcggaagctagtt 7546455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 15132694 - 15132585
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| | ||||||||||||  ||||||||||| | ||| | ||||||| ||||| ||||||||| ||||||||| | |||| || |    
T  15132694 ttcgagatcgggagtcggtgactagctgcaatc-ctgtttgacttgatatgg-tgttctctgatgtactgggggcgaggggtgccctgttgattttgttc 15132597  T
Q  388 tatagtctggtg 399  Q
    || |||||||||    
T  15132596 taaagtctggtg 15132585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 26216089 - 26216043
Alignment:
Q  391 agtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    |||||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  26216089 agtctggtgggccgatcacttttgattcgagatcgggagtcagttct 26216043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 20499934 - 20499974
Alignment:
Q  395 tggtggaccgatcacttttgatccgagatcggaagttagtt 435  Q
    ||||||||||||| |||||||| |||||||||||| |||||    
T  20499934 tggtggaccgatcgcttttgattcgagatcggaagatagtt 20499974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 461
Target Start/End: Original strand, 19291 - 19464
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| ||||||||||| ||||  |||| |||  |||| | |||||||||| ||||   || ||| |||||||| || ||||||| |    
T  19291 ttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttggtcc 19390  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttgggct 461  Q
    || |||||||||| ||||||||||||||| ||||||||||||| |||||| || || ||||| | |||||||||    
T  19391 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggct 19464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 36616 - 36764
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||| ||||||||||||| |||||||| | || |||||| |||||||||||||||| | | ||| |||||||| || ||||||| |    
T  36616 ttcgagatcaggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctggtgtaccgagagtgaggggtgcccttctgatttggtcc 36714  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttct 437  Q
    || ||||||| || | ||||||||||||| ||||||||| ||| ||||||    
T  36715 taaagtctggcgggctgatcacttttgattcgagatcgggagtcagttct 36764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 459
Target Start/End: Complemental strand, 42311 - 42140
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||  ||||||||||| ||||  |||| |||  |||| | |||||||||| ||||   || ||| |||||||| || |||| || |    
T  42311 ttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcc 42212  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagttagttctgtgacttaagttggtttttggg 459  Q
    || |||||||||| ||||||||||||||| ||||||||||||| |||||| || || ||||| | |||||||    
T  42211 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 430
Target Start/End: Original strand, 58036 - 58177
Alignment:
Q  288 ttcgagatctggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtac 387  Q
    ||||||||| |||||||  |||||||||||||||| ||||| | || |||||| |||||||||||||||  ||| |   |||||||| |  ||||||| |    
T  58036 ttcgagatcgggagtcgttgtctagctgcaatctt-gtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcccttcagatttggtcc 58134  T
Q  388 tatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    || ||| |||||| ||||||||||||||| | |||||||||||    
T  58135 taaagtttggtgggccgatcacttttgattcaagatcggaagt 58177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 437
Target Start/End: Complemental strand, 1245 - 1041
Alignment:
Q  231 tcatgtctttcgtcttacatattgtgtgctggtttttgatggatcgattcgtttggtttcgagatctggagtcggggtctagctgcaatctttgtttgac 330  Q
    ||||||| || ||||||||||||||||||||| || |  |||  |||||  ||| | ||||||||  ||||| || |||||||||||||| ||||||||     
T  1245 tcatgtcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatc-ttgtttgat 1147  T
Q  331 ttggtttggtttttctctggtgtaccgggggcgagcggtgccctgctaatttggtactatagtctggtggaccgatcacttttgatccgagatcggaagt 430  Q
    |   |||||| ||||||||||| || |||   ||| ||| |||| || |||||||  |  |||||||||| |||||| |||||||| ||||||||| |||    
T  1146 tgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagt 1048  T
Q  431 tagttct 437  Q
     ||||||    
T  1047 cagttct 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University