View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_17 (Length: 449)
Name: NF14323_low_17
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 35949869 - 35949448
Alignment:
| Q |
14 |
cagagatcaaggaggcaacacatcaacacgatggtgaatacatagcggtgtaacaacaaaacccgacaaaaccaaacaacctgcaatccaaaagcaggtt |
113 |
Q |
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| T |
35949869 |
cagagatcaaggaggcaacacatcaacacgatggtgaatacatagcggtgtaacaacaaaacccgacaaaaccaaacaacctgcaatccaaaagcaggtt |
35949770 |
T |
|
| Q |
114 |
acaagtacttcaaagtgaatcgcggtgagctaacttcaaaccgcccagaggccagaagtgctaagaggtggtgacgcctatagaagacttgcacaacagc |
213 |
Q |
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| T |
35949769 |
acaagtacttcaaagtgaatcgcggtgagctaacttcaaaccgcccagaggccagaagtgctaagaggtggtgacgcctatagaagacttgcacaccacc |
35949670 |
T |
|
| Q |
214 |
aaaacattctctacatgtttcctaaacaagtatggattggaggggaaagaaaactaggaagttggcagacaatttgggtaggcggtgggtgagttccaga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35949669 |
aaaacattctctacatgtttcctaaacaagtatggattggaggggaaagaaaactaggaagttggcagacaatctgggtaggcggtgggtgagttccaga |
35949570 |
T |
|
| Q |
314 |
gaga-gggagataacttctttctcatcttatatatcataggttattttcatacaattattgaaatacgtatatcataagattagctaaaacgagtaaata |
412 |
Q |
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||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |
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| T |
35949569 |
tagatgggagagaacttctttctcaacatatatatcataggttattttcatacaattattgaaatacttatatcatcagattagcttaaacgagtaaata |
35949470 |
T |
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| Q |
413 |
atatttttcaaacacaaataat |
434 |
Q |
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| T |
35949469 |
atatttttcaaacacaaataat |
35949448 |
T |
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