View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_18 (Length: 446)
Name: NF14323_low_18
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_18 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 32099711 - 32099487
Alignment:
| Q |
211 |
cacttagttaattaatagatgatcacaatatatatgtatgtactaaattataannnnnnnn---gggtgactatggctccggcaatcaaatgtagtattt |
307 |
Q |
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| T |
32099711 |
cacttagttaattaatagatgatcacaatatatatgtatgtactaaattataatttttttttttgggtgactatggctccggcaatcagatgtagtattt |
32099612 |
T |
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| Q |
308 |
tcccaacatagtggcagccatgcagaatatatagtagtttattgaaagctgtcaaatataatttatcaaatgtgttgccttgaacaattccaattagcga |
407 |
Q |
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| T |
32099611 |
tcccaacatagtggcagccatgcagaatatatagtagtttattgaaagctgtcaaatataatttatcaaatgtgttgccttgaacaattcctattagcga |
32099512 |
T |
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| Q |
408 |
ctagcgtaaccttctgtctcccttt |
432 |
Q |
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| T |
32099511 |
ctagcgtaaccttctgtctcccttt |
32099487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 32099776 - 32099703
Alignment:
| Q |
7 |
tgttgtacaacatttgttaaggtgattcatcacttagttttatt-ttttcagagcaaatgatcatcacttagtt |
79 |
Q |
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| T |
32099776 |
tgttgtacaacatttgttaaggtgattcatcacttagttttattttttttagaggaaatgattatcacttagtt |
32099703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 37092 - 37239
Alignment:
| Q |
71 |
cacttagtttgtgtttgttaacgcagtaggtgagcctaaacgtgcgattagattgaagatgtaaaatatagcatcgtaatatcaaaggaaaataaatatt |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37092 |
cacttagtttgtgtttgttaacgcagtaggtgagcctaaacgtgcgattagatagaagatgtaaaatatagcatcgtaatatcaaaggaaaataagtatt |
37191 |
T |
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| Q |
171 |
gagacgtgatattaacaaagtggatgttgaaccaaacaagcacttagt |
218 |
Q |
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| T |
37192 |
gagacgcgatattaacaaagtggatgttgaaccaaacaagcacttagt |
37239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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