View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_19 (Length: 446)
Name: NF14323_low_19
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 178 - 429
Target Start/End: Original strand, 23325295 - 23325562
Alignment:
| Q |
178 |
attaatactttgatccctttagccacaatccattttaaatgaatagtgnnnnnnnnntggtgaatcatttagtgataaacaatccaacatcataatgcac |
277 |
Q |
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| T |
23325295 |
attaatactttgatccctttagccacaatccattttaaatgaatagtgaaaaaaaaatggtgaatcatttagtgataaacaatccaacatcataatgcac |
23325394 |
T |
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| Q |
278 |
ataaagaatactaataatgaaacacagtgacaa----------------atggaaaaatcattcaaccaaaaagggtcgtttaaagagtataaagatgag |
361 |
Q |
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| T |
23325395 |
ataaagaatactaataatgaaacacagtgacaaatgaaagaagccacaaatggaaaaatcattcaaccaaaaagggtcgtttaaagagtataaagatgag |
23325494 |
T |
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| Q |
362 |
aactatatgttaaaataaaatatgcaacaaacatacctcttggtaaatgaaaactgaatccagctcct |
429 |
Q |
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| T |
23325495 |
aaccatatgttaaaataaaatatgctacaaacatacctcttggtaaatgaaaactgaatccagctcct |
23325562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 23325111 - 23325260
Alignment:
| Q |
12 |
tttcttgacaaaatgatcgagacattgtcggatactaaatatgaacaactctctcaataaaaaatgttgatgcaaagtata-------------tttaaa |
98 |
Q |
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| T |
23325111 |
tttcttgacaaaatgatcgagacattgtcggatactaaatatgaacaactctctcaataaaaaatgttgatgcaaagtatattagtatttgtcgttaaaa |
23325210 |
T |
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| Q |
99 |
atcaatgttgatgcacaaaaaattataacatccacccaattttactgagat |
149 |
Q |
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| T |
23325211 |
atcaatgttgatgcacaaaaaattacaacatccacccaa-tttactgagat |
23325260 |
T |
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