View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_low_20 (Length: 436)
Name: NF14323_low_20
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 89 - 419
Target Start/End: Complemental strand, 8892815 - 8892483
Alignment:
| Q |
89 |
aagacaagatggttataaagtacttaaagccacacattgtgcaatgtgacgagtatgggaaaccaccatttaggtt-agtacaagtgtttgatgcgcata |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8892815 |
aagacaagatggttataaagtacttaaagccacacattgtgcaatgtgacgagtatgggaaaacaccatttaggtttagtacaagtgtttgatgcgcata |
8892716 |
T |
|
| Q |
188 |
atatgcaagttttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacatataattctacgtatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8892715 |
atatgcaagttttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacgtataattttacgtatg |
8892616 |
T |
|
| Q |
288 |
atatttggatcttggacagttggaatcacttacaattttcaactatgtttgcgtcagttgagtttgtta-ttacgactttcaactatgtttgtgtaagtt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
8892615 |
atatttggatcttggacagttggaatcacttacaattttcaactatgtttgcgtcagttgagtttgttacttacgattttcaactatgtttgtgtaagtt |
8892516 |
T |
|
| Q |
387 |
gagttcgtatgcatgcatgggtttccatgaagc |
419 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
8892515 |
gagttcgtatgcatgcatgggttttcatgaagc |
8892483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8892888 - 8892854
Alignment:
| Q |
1 |
ataaagtacaaacaagtgtaagaaaaaatcttgaa |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8892888 |
ataaagtacaaacaagtgtaagaaaaaatcttgaa |
8892854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University