View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14323_low_22 (Length: 413)

Name: NF14323_low_22
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14323_low_22
NF14323_low_22
[»] chr8 (10 HSPs)
chr8 (54-395)||(43896007-43896348)
chr8 (54-395)||(44301348-44301694)
chr8 (54-395)||(44306460-44306802)
chr8 (54-395)||(44312248-44312581)
chr8 (144-245)||(43895568-43895669)
chr8 (144-245)||(44305992-44306093)
chr8 (27-69)||(44312183-44312226)
chr8 (26-64)||(44301283-44301322)
chr8 (29-69)||(43895902-43895943)
chr8 (29-69)||(44306353-44306394)
[»] chr3 (2 HSPs)
chr3 (54-395)||(4084120-4084466)
chr3 (27-69)||(4084056-4084099)
[»] chr4 (1 HSPs)
chr4 (64-395)||(18701618-18701956)
[»] chr6 (3 HSPs)
chr6 (114-296)||(8159128-8159313)
chr6 (318-395)||(8159008-8159085)
chr6 (318-378)||(409891-409951)
[»] chr5 (1 HSPs)
chr5 (88-378)||(35856767-35857053)
[»] chr7 (1 HSPs)
chr7 (199-240)||(15040307-15040348)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 43896007 - 43896348
Alignment:
Q  54 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 153  Q
    |||| ||||||||||| |||||||||| |||||  ||||| |||||||||||||| ||||| ||| || ||||||||| || ||||||||||||||||||    
T  43896007 ataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaattt 43896106  T
Q  154 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagatga 253  Q
    |||||||||||| | |||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |    
T  43896107 ctctccagaatcttatgagatagaataatcaggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaata 43896206  T
Q  254 gcatcaaacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatcttctcac 353  Q
    ||||| ||||||| || ||| ||||||||||||||||||||||  |||||||||  ||| ||||||||||||  ||||||||||||| ||||||||| ||    
T  43896207 gcatctaacacaataataatctctccagcatgagcttcatcaacttcctcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttac 43896306  T
Q  354 cagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  43896307 cagtgttaacatttgtaataaaatcacccttcttaataacac 43896348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 44301348 - 44301694
Alignment:
Q  54 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctc-----tggaatgaatcaattcacaccatttgaa 148  Q
    |||| |||||||||||||||||||||| |||||  |||||| ||||||||||||| ||||||||| |     ||||||||||||||||||||||||||||    
T  44301348 ataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaa 44301447  T
Q  149 aatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaa 248  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  44301448 aatttctctccagaatcttttgacaccgaataagtaggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaa 44301547  T
Q  249 gatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatctt 348  Q
    ||  |  | | ||||||| |||||||||||| |||||||||||||||| |  |||||||| ||| ||||||||||||  ||| | |  |||| |||||||    
T  44301548 gaacaatagctaacacaataacaatttctccggcatgagcttcatcaacaaactcaatcacatcatcatgtctcttagacaagctataaatctgaatctt 44301647  T
Q  349 ctcaccagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44301648 ctcaccagtgttaacatttgtaataaaatcacccttcttgataacac 44301694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 44306460 - 44306802
Alignment:
Q  54 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaatt- 152  Q
    |||| ||||||||||| |||||||||| |||||  ||||| |||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||       
T  44306460 ataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaaaac 44306559  T
Q  153 tctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagatg 252  Q
    ||||||||||||| | |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44306560 tctctccagaatcttatgagacagaataagtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaag 44306659  T
Q  253 agcatcaaacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatcttctca 352  Q
    |||||| ||||  | ||||||||||||||||||||||||||||| || |||||||  ||| ||||||||||||| |||   | ||||| |||||||||||    
T  44306660 agcatcgaacaacataacaatttctccagcatgagcttcatcaacatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctca 44306759  T
Q  353 ccagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  44306760 ccagtgttaacatttgtaataaaatcatccttcttaataacac 44306802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 44312248 - 44312581
Alignment:
Q  54 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 153  Q
    |||| ||||||||||| || |||| ||||||||  |||||||||||||  ||||| ||||| |||||| ||||||||| |||||||||||||||||||||    
T  44312248 ataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaattt 44312347  T
Q  154 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagatga 253  Q
    |||||||||| | |||||||| ||        |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |    
T  44312348 ctctccagaaacttttgagacgga--------gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaata 44312439  T
Q  254 gcatcaaacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatcttctcac 353  Q
    ||| |||||||||||||||||||||||||||||||||||||||  |||| ||||  | | | ||||||||||||||||| |||||||  |||||||| ||    
T  44312440 gcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttccttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttac 44312539  T
Q  354 cagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  44312540 cagtgttaacgtttgtaataaaatcacccttcttaataacac 44312581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 43895568 - 43895669
Alignment:
Q  144 ttgaaaatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccaga 243  Q
    ||||||||| | |||||||||| |||||||||||| ||| | ||| || | |||  ||||||| |||||||||||||||||||| |||||||||||||||    
T  43895568 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacagacccatcagcaaaagtatctccaga 43895667  T
Q  244 tt 245  Q
    ||    
T  43895668 tt 43895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 44305992 - 44306093
Alignment:
Q  144 ttgaaaatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccaga 243  Q
    ||||||||| | |||||||||| |||||||||||| ||| | ||| || | |||  ||||||| ||||||||| |||||||||| |||||||||||||||    
T  44305992 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacggacccatcagcaaaagtatctccaga 44306091  T
Q  244 tt 245  Q
    ||    
T  44306092 tt 44306093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 44312183 - 44312226
Alignment:
Q  27 tgagtaactactaacta-tcagagatcaataattaagcaacaaa 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  44312183 tgagtaactactaactaatcagagatcaataattaagcaacaaa 44312226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 44301283 - 44301322
Alignment:
Q  26 ctgagtaactactaacta-tcagagatcaataattaagca 64  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  44301283 ctgagtaactactaactaatcagagatcaataattaagca 44301322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 43895902 - 43895943
Alignment:
Q  29 agtaactactaacta-tcagagatcaataattaagcaacaaa 69  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  43895902 agtaactactaaataatcagagatcaataattaagcaacaaa 43895943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44306353 - 44306394
Alignment:
Q  29 agtaactactaacta-tcagagatcaataattaagcaacaaa 69  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaa 44306394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 4084120 - 4084466
Alignment:
Q  54 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 153  Q
    |||| ||||||||||| ||||| |||| |||||  ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4084120 ataaataagcaacaaaccatagtaaagctaacaagccaaaccaactgg-taagtaggatcatttctctggaatgaatccattcacaccatttgaaaattt 4084218  T
Q  154 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagatga 253  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||  |    
T  4084219 ctctcctgaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaata 4084318  T
Q  254 gcatca------aacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatct 347  Q
    ||||||      ||||||| ||||| |||||||||||||||||||||||   ||| ||||  ||  ||||||||||||  |||||||||||||  |||||    
T  4084319 gcatcaaactttaacacaataacaagttctccagcatgagcttcatcaactgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatct 4084418  T
Q  348 tctcaccagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  4084419 tcttaccggtgttaacatttgtaataaaatcacccttcttgataacac 4084466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 4084056 - 4084099
Alignment:
Q  27 tgagtaactactaacta-tcagagatcaataattaagcaacaaa 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  4084056 tgagtaactactaactaatcagagatcaataattaagcaacaaa 4084099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 64 - 395
Target Start/End: Original strand, 18701618 - 18701956
Alignment:
Q  64 aacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatt---tctctggaatgaatcaattcacaccatttgaaaatttctctcca 160  Q
    |||||| ||| |||||| ||| | ||||||||||| ||||||||| |||||||   ||||| ||||||||||||||||||||||||||||| | |  ||     
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccg 18701717  T
Q  161 gaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagacccat---cagtaaaagtatctccagatttaagatgagcat 257  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   | ||||||||||||||||||| |||||||||||    
T  18701718 gaatcttttgagaccgaataagcaggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcat 18701817  T
Q  258 caaacacaaaaacaatttctccagcatgagcttcatcaagatcctcaatcagatcgtcat-gtctcttacccaaacgaggaatcagaatcttctcaccag 356  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||| ||   ||   | | ||||||| ||||||||||||||| ||||||||| |||||    
T  18701818 caaaaacaaaaacaatttctccagcatgagcttcatcaacttcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccag 18701917  T
Q  357 tgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18701918 tgttaacatttgtaataaaatcacccttcttaataacac 18701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 8159313 - 8159128
Alignment:
Q  114 atttctctggaatgaatcaattcacaccatttgaaaatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcag---tcattgtata 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||   ||||| ||||    
T  8159313 atttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatata 8159214  T
Q  211 tctaacagacccatcagtaaaagtatctccagatttaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaa 296  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159213 tctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaa 8159128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 8159085 - 8159008
Alignment:
Q  318 gtctcttacccaaacgaggaatcagaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacac 395  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  8159085 gtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacac 8159008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 409891 - 409951
Alignment:
Q  318 gtctcttacccaaacgaggaatcagaatcttctcaccagtgttaacatttgtaataaaatc 378  Q
    ||||||||  || |||||||| |  |||||||| ||||||||||||||| |||||||||||    
T  409891 gtctcttaaacatacgaggaaccttaatcttcttaccagtgttaacattagtaataaaatc 409951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 378
Target Start/End: Complemental strand, 35857053 - 35856767
Alignment:
Q  88 accaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaatttctctccagaatcctttgagaccgaataagcagga 187  Q
    ||||||||||||||||||||| |||||||||||||     |||| ||||||| |||||||| ||| ||| | |||||| ||||||||||||||| || ||    
T  35857053 accaaaccaactgggtaagtaggatcatttctctg----taatccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaaga 35856958  T
Q  188 acatcggcagcagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagatgagcatcaaacacaaaaacaatttctccagcatgag 287  Q
    |||| ||||| |||||| |   |||||||||||||||||||||| || ||||| | |  |  || | ||||| | |||| |||||||| |||||||||||    
T  35856957 acattggcagaagtcatagcccatctaacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgag 35856858  T
Q  288 cttcatcaagatcctcaatcagatcgtcatgtctcttacccaaacgaggaatcagaatcttctcaccagtgttaacatttgtaataaaatc 378  Q
    | |||| ||  || |||||   |||   |  |||||||  |||| ||  || |  |||||||||||||||||||||||| |||||||||||    
T  35856857 cctcattaacttcatcaataccatcacaacttctcttaaacaaatgattaaccttaatcttctcaccagtgttaacattagtaataaaatc 35856767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 15040307 - 15040348
Alignment:
Q  199 agtcattgtatatctaacagacccatcagtaaaagtatctcc 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  15040307 agtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University