View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_low_28 (Length: 374)
Name: NF14323_low_28
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_28 |
 | |
|
| [»] scaffold0105 (6 HSPs) |
| |
|
| [»] chr4 (12 HSPs) |
| |
|
| [»] scaffold0345 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0105 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 74 - 374
Target Start/End: Original strand, 492 - 792
Alignment:
| Q |
74 |
tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
492 |
tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca |
591 |
T |
|
| Q |
174 |
acatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg |
273 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592 |
acatctacttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg |
691 |
T |
|
| Q |
274 |
atgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc |
373 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
692 |
atgtttttatcttttaacgcaccactgtcttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc |
791 |
T |
|
| Q |
374 |
t |
374 |
Q |
| |
|
| |
|
|
| T |
792 |
t |
792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 2073 - 2183
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2073 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
2172 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
2173 |
tctacacttct |
2183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 6859 - 6969
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6859 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
6958 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
6959 |
tctacacttct |
6969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 14224 - 14334
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14224 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
14323 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
14324 |
tctacacttct |
14334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 50618 - 50508
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50618 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
50519 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
50518 |
tctacacttct |
50508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 32220 - 32110
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32220 |
aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
32121 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
32120 |
tctacacttct |
32110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 8184133 - 8183777
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | |||||||||||||| ||| |||||||| ||||||| ||| || |||||||||||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
8184133 |
aaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca |
8184034 |
T |
|
| Q |
119 |
ttttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcagacatatcaat |
218 |
Q |
| |
|
|| ||| ||||||| | ||| || || ||||||||||| |||||||| |||||||| |||||||||||||| |||| ||| |||||| || |||| |
|
|
| T |
8184033 |
ttctgctcagcctcatttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaatacctttttcagaaatgtcaaa |
8183934 |
T |
|
| Q |
219 |
gaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaacgcaccactgccttgcaaac-tacgaga |
317 |
Q |
| |
|
| |||||||||||||||| |||||||||| ||||| || |||||||| |||||| |||||||||| ||||| || | || |||||||| || |||| |
|
|
| T |
8183933 |
gcaatgactcaaatcaagccgctgcaaattggggaacacggaagcaaattttttgacgtttttatctgttaaccaacgattgatttgcaaacttaagaga |
8183834 |
T |
|
| Q |
318 |
ctttatttgagggcttataacaatatccattaaagaattataattctctacacttct |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8183833 |
ctttatttgagggcttataacaatatccattaaagaattataattctctacacttct |
8183777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 8187194 - 8186957
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | ||||||||||| || ||| | |||| ||||||||| ||| || |||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
8187194 |
aaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca |
8187095 |
T |
|
| Q |
119 |
ttttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcagacatatcaat |
218 |
Q |
| |
|
|| | |||| ||||||| | | |||||||||||||| || ||||| |||||||||||| | |||| ||| |||||| |||||||||| || ||| |
|
|
| T |
8187094 |
ttccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcata |
8186995 |
T |
|
| Q |
219 |
gaaatgactcaaatcaagtagctgcaaatttgggaata |
256 |
Q |
| |
|
| |||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
8186994 |
gcaatgactcaaatcaagcaactgcaaattggggaata |
8186957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 1600474 - 1600687
Alignment:
| Q |
78 |
tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat |
177 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| || ||| ||| | ||||| ||| |||||||||||| | |||||||| | || || |
|
|
| T |
1600474 |
tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattttagaaaat |
1600573 |
T |
|
| Q |
178 |
ctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatact-gaagcaaacattttgatg |
276 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||| || | |||| || ||||||||||| || |||||| ||||||| | | |||||||||||| |||| |
|
|
| T |
1600574 |
ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaa-ttgggaaaattggaagcaaacattatgatc |
1600672 |
T |
|
| Q |
277 |
tttttatcttttaac |
291 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
1600673 |
tttgtatcttgtaac |
1600687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 659755 - 659895
Alignment:
| Q |
69 |
acttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatt |
168 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||| | ||||||||| || ||| |||||| || |||||||| | |||||||||| || | |||||| |
|
|
| T |
659755 |
acttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatg |
659854 |
T |
|
| Q |
169 |
tcacaacatctccttaaaatttgtcaaatatcttcttcaga |
209 |
Q |
| |
|
| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
659855 |
ttacaacatctccttaaaatttgaccaatatcttcttcaga |
659895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 7225900 - 7225809
Alignment:
| Q |
105 |
aacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa |
196 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| | | |||| ||||||||| | |||||| | ||||||||||| ||||| ||| |||| |
|
|
| T |
7225900 |
aacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaa |
7225809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 1548527 - 1548428
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatc--tacttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||| || |||||| ||||| ||||||||||||||||| ||||||||| | || ||||||||||| |
|
|
| T |
1548527 |
aaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca |
1548428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 53761816 - 53761696
Alignment:
| Q |
78 |
tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat |
177 |
Q |
| |
|
|||||||||||||| ||| || || | |||| ||||||||||| |||| ||||||||||| ||| |||||||||||| | ||||| | ||||||| |
|
|
| T |
53761816 |
tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat |
53761717 |
T |
|
| Q |
178 |
ctccttaaaatttgtcaaata |
198 |
Q |
| |
|
|||||||||| ||| |||||| |
|
|
| T |
53761716 |
ctccttaaaacttgacaaata |
53761696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 546909 - 547010
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | ||||||||||||||| || |||||| || ||||| || || || |||||||||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
546909 |
aaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttca |
547008 |
T |
|
| Q |
119 |
tt |
120 |
Q |
| |
|
|| |
|
|
| T |
547009 |
tt |
547010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 547204 - 547261
Alignment:
| Q |
314 |
gagactttatttgagggcttataacaatatccattaaagaattataattctctacact |
371 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||| | ||||||||| ||||||||||||| |
|
|
| T |
547204 |
gagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacact |
547261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 553475 - 553643
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctacttttatg--tgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||||| ||||||||||| ||| || ||||||| |||||| ||| || | ||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
553475 |
aaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca |
553574 |
T |
|
| Q |
119 |
ttttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaa |
187 |
Q |
| |
|
| | |||| | ||||||||||| | || ||||||||| | |||||| | ||||||| ||||||||| |
|
|
| T |
553575 |
atgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaa |
553643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 55908833 - 55908641
Alignment:
| Q |
19 |
gtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctact--tttatgtgacaagttcaacgactccagtttagaaacttcaaagtt |
116 |
Q |
| |
|
||||||||||| | ||| ||||||||||| | |||||| || |||||| || | ||||||||||||| ||| ||| | || || ||||| |||||| |
|
|
| T |
55908833 |
gtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtt |
55908734 |
T |
|
| Q |
117 |
cattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga |
209 |
Q |
| |
|
||| | |||| ||||||||||| | |||||||| ||||| | ||||| | |||||||||||||| || || |||||| |||||||||| |
|
|
| T |
55908733 |
tattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcaga |
55908641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 1519227 - 1519144
Alignment:
| Q |
39 |
tttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt |
120 |
Q |
| |
|
||||||||| || ||||||||| ||||| || || ||||||||||||||||| ||| ||||| | |||||||||||||||| |
|
|
| T |
1519227 |
tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt |
1519144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 6759 - 6869
Alignment:
| Q |
264 |
aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc |
363 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6759 |
aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc |
6858 |
T |
|
| Q |
364 |
tctacacttct |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
6859 |
tctacacttct |
6869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 18315364 - 18315187
Alignment:
| Q |
33 |
caactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcc |
130 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||| |||||| |||||||||||||||| ||||||||| | ||||| |||||||||| |||||| |
|
|
| T |
18315364 |
caactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagct |
18315265 |
T |
|
| Q |
131 |
tcactcttgaa-aactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcag |
208 |
Q |
| |
|
||| ||||||| || | ||||||||||| | |||||| ||| |||| || | ||||| ||| |||||| ||||||||| |
|
|
| T |
18315264 |
tcattcttgaatcacga-gctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcag |
18315187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 17628114 - 17628018
Alignment:
| Q |
24 |
agcccagagcaactctttgagatcgcaaagagtgctttatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
|||||| | ||| ||||||||||| || ||||||||||||||| ||| | ||||||||||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
17628114 |
agcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca |
17628018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 27922504 - 27922606
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | ||||||||||||||| | | ||||||| |||||| || ||| || ||||||||||||| ||||| ||| | |||||||||||||| |
|
|
| T |
27922504 |
aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca |
27922603 |
T |
|
| Q |
119 |
ttt |
121 |
Q |
| |
|
||| |
|
|
| T |
27922604 |
ttt |
27922606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 34936254 - 34936098
Alignment:
| Q |
33 |
caactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcc |
130 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||| ||| || || |||||||| |||| ||| ||||| | ||| |||||| ||||| || | || |
|
|
| T |
34936254 |
caactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaaggt |
34936155 |
T |
|
| Q |
131 |
tcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaa |
187 |
Q |
| |
|
||||| ||||| | | ||| |||| ||| | |||||| ||||||||||||||||||| |
|
|
| T |
34936154 |
tcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaa |
34936098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 32151501 - 32151553
Alignment:
| Q |
226 |
ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtt |
278 |
Q |
| |
|
||||||||||| || |||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
32151501 |
ctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgtt |
32151553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 9411555 - 9411620
Alignment:
| Q |
226 |
ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac |
291 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
9411555 |
ctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaac |
9411620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 12102317 - 12102361
Alignment:
| Q |
74 |
tatgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
12102317 |
tatgtgacaagttcaacacctccagtttgggaacttcaaagttca |
12102361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 9586844 - 9586904
Alignment:
| Q |
231 |
atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac |
291 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9586844 |
atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaac |
9586904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 9581276 - 9581335
Alignment:
| Q |
231 |
atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaa |
290 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| |||| |
|
|
| T |
9581276 |
atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaa |
9581335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 1037769 - 1037577
Alignment:
| Q |
19 |
gtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctact--tttatgtgacaagttcaacgactccagtttagaaacttcaaagtt |
116 |
Q |
| |
|
||||||||||| | ||| ||||||||||| | |||||| || |||||| || | ||||||||||||| ||| ||| | || || ||||| |||||| |
|
|
| T |
1037769 |
gtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtt |
1037670 |
T |
|
| Q |
117 |
cattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga |
209 |
Q |
| |
|
||| | |||| ||||||||||| | |||||||| ||||| | ||||| | ||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
1037669 |
tattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcaga |
1037577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 41889450 - 41889399
Alignment:
| Q |
226 |
ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgt |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||| |||||| |
|
|
| T |
41889450 |
ctcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgt |
41889399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 41901626 - 41901542
Alignment:
| Q |
33 |
caactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagt |
115 |
Q |
| |
|
||||||||||||||| | | ||||||| |||||| |||||| || ||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
41901626 |
caactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt |
41901542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 51113884 - 51113700
Alignment:
| Q |
21 |
aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca |
118 |
Q |
| |
|
||||||||| | |||||||| |||||| || |||||| || |||||| || || ||| |||||||| ||| ||||||||| | | |||||||||||| |
|
|
| T |
51113884 |
aaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttca |
51113785 |
T |
|
| Q |
119 |
ttttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttc |
203 |
Q |
| |
|
|| ||||| ||| | ||||| | || ||||| ||||| | ||||||| |||||||||| |||||| ||| |||||| |||| |
|
|
| T |
51113784 |
ttccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
51113700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 514624 - 514580
Alignment:
| Q |
226 |
ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacatt |
270 |
Q |
| |
|
|||||||||| |||||||||||| ||||| | ||||||||||||| |
|
|
| T |
514624 |
ctcaaatcaattagctgcaaattcgggaaaattgaagcaaacatt |
514580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 7977605 - 7977764
Alignment:
| Q |
52 |
agagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggc |
149 |
Q |
| |
|
|||||| ||||||||| ||| || ||||||||||||||| | ||| ||||| |||| || || |||||| ||||| |||| |||||| | |||| |
|
|
| T |
7977605 |
agagtgttttatcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggc |
7977704 |
T |
|
| Q |
150 |
taagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga |
209 |
Q |
| |
|
|| ||| || | |||||| | ||||||||||||||||| ||| | |||| |||||||||| |
|
|
| T |
7977705 |
taggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga |
7977764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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