View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14323_low_29 (Length: 373)

Name: NF14323_low_29
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14323_low_29
NF14323_low_29
[»] chr1 (1 HSPs)
chr1 (20-373)||(1590714-1591065)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 373
Target Start/End: Complemental strand, 1591065 - 1590714
Alignment:
Q  20 accctctcataattcctcatccaaaaccagaagaaagnnnnnnnnttcattcattttcaatctcacttctctcttcttctcttgtgctatatacctcttg 119  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1591065 accctctcataattcctcatccaaaaccagaagaaa--aaaaaaattcattcattttcaatctcacttctctcttcttctcttgtgctatatatctcttg 1590968  T
Q  120 cttaatctttgtctttacnnnnnnnnnnnnnnnnnnntatgtctggggtttgggtgttcaagaatggcgtgtttcgattggtcgagaatcctcaagcaga 219  Q
    ||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590967 cttaatctttgtctttacaaaaacaaaacaaaaaaaatatgtctggggtttgggtgttcaagaatggcgtgtttcgattggtcgagaatcctcaagcaga 1590868  T
Q  220 atcggaagtaaggcatgggaagaggaagatgttggttcacttgcccacaggggaagtggtaacttcttatgcttttcttgagagaatattgattggttta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590867 atcggaagtaaggcatgggaagaggaagatgttggttcacttgcccacaggggaagtggtaacttcttatgcttttcttgagagaatattgattggttta 1590768  T
Q  320 ggttgggagaggtactatgatggagatgttgatttataccaatttcataaacac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590767 ggttgggagaggtactatgatggagatgttgatttataccaatttcataaacac 1590714  T

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