View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_31 (Length: 346)
Name: NF14323_low_31
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 3603760 - 3603445
Alignment:
| Q |
17 |
tattcatatttaga--gattacctacacaatctaatttaaaaattctactgttgaacgattagtgtaatttcttgggacagatctcagaggcatccttga |
114 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603760 |
tattcatatttagactgattacctacacaatctaatttaaaaatgctactgttgaacaattagtgtaatttcttgggacagatctcagaggcatccttga |
3603661 |
T |
|
| Q |
115 |
tgattgggcttctaaaaatattagggtctcaaatannnnnnnagatttatgaatgactctattaagcgtacataaaatatcaaattgcttgcgatgtccg |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603660 |
tgattgggcttctaaaaatattagggtctcaaatatttttttagatttatgaatgactctattaagcgtacataaaatatcaaattgcttgcgatgtccg |
3603561 |
T |
|
| Q |
215 |
attgaagtgagcaatgaatataacctatgacatgatctatactattgactattgtccattttaccagcaaaacacatatatattgaggttttc---tatg |
311 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
3603560 |
agtgaagtgagcaatgaatataacctatgacatgatctatactattgactattgtccattttaccagcaaaacac----atattgaggttttctcttatg |
3603465 |
T |
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| Q |
312 |
atgaatttcatgcctccatt |
331 |
Q |
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|||||||||||||||||||| |
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| T |
3603464 |
atgaatttcatgcctccatt |
3603445 |
T |
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