View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_33 (Length: 334)
Name: NF14323_low_33
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 29210911 - 29211264
Alignment:
| Q |
1 |
ttattatttttctcataataataagattaagaatcattgtaccttattactattttattcctacagacaaaaaattgattttctgaagttgtcttctctt |
100 |
Q |
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| T |
29210911 |
ttattatttttctcataataataagattaagaatcattgtaccttattactattttattcctactgacaaaaaattgattttctgaagttgttttctctt |
29211010 |
T |
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| Q |
101 |
ttcttcaaatttgtgaaacacattcatggcccatgggttcccaaattt------------------taaaggaagatagtgaccatttctagttttgttt |
182 |
Q |
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| T |
29211011 |
ttcttcaaatttgtgaaacacattcatggcccatgggttcccaaatttctgatactcatcgaagtttgaaggaagatagtgaccatttctagttttgttt |
29211110 |
T |
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| Q |
183 |
gtgttgggttgtcgtt-gtaacacatt-tgtcattatcattgtacaaagttactgtacataattcacagtaatttattccagaagtgcagtctgtagccc |
280 |
Q |
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|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29211111 |
gtgttgggttgtcgtttgtagcacattatgtcattatcattgtacaaagttactgtacataattcacagtaatttattccagaagtgcagtctgtagccc |
29211210 |
T |
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| Q |
281 |
aaattctagctataaattaataacgagtctgatgaagcaagcatttctttattt |
334 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29211211 |
aaattctagctataaattaataacgagtcagatgaagcaagcatttctttattt |
29211264 |
T |
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