View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_low_42 (Length: 304)
Name: NF14323_low_42
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 27409481 - 27409214
Alignment:
| Q |
19 |
tctattaaaagccactttgattccacacaatgcttaactctactgcaccctaatccttgtgagttgtgagtcatatccactaatccacaccatgcgtaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27409481 |
tctattaaaagccactttgattccacacaatgcttaactctactgcaccctaatccttgtgagttgtgagtcatatccactaatccacaccatgcgtaga |
27409382 |
T |
|
| Q |
119 |
gaattaatgctaaaacagaaagcacagtaacctctatgtaccaatagtcaaggttactataaagcatagtagtatattaatattagcatagacaagcaag |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27409381 |
gaattaatgctaagacagaaagcacagtaacctctatgtaccaagagtcaaggttactataaagcatagtagtatattaatattagcatagacaagcaag |
27409282 |
T |
|
| Q |
219 |
gagatagaaccacc-ttccaaccaaaaagtttcaattttagctcccaaattgaggataacttcagaat |
285 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27409281 |
gagatagaaccacctttccaaccaaaaagtttcaattttagctcccaaattgaggataacttcagaat |
27409214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 27429728 - 27429645
Alignment:
| Q |
202 |
tagcatagacaagcaaggagatagaaccaccttccaaccaaaaagtttcaattttagctcccaaattgaggataacttcagaat |
285 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
27429728 |
tagcataaacaagcaaggagatagaaccaccttataaccataaagtttcagttttagcacccaaattgaggataccttcagaat |
27429645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University