View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_43 (Length: 302)
Name: NF14323_low_43
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 10970835 - 10970683
Alignment:
| Q |
4 |
gtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattata |
103 |
Q |
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| T |
10970835 |
gtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattata |
10970736 |
T |
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| Q |
104 |
tttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
156 |
Q |
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| T |
10970735 |
tttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
10970683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 10970639 - 10970508
Alignment:
| Q |
153 |
tgaacaacgaaagagacatca---ctctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
249 |
Q |
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| T |
10970639 |
tgaacaacgaaagagacatcatcactctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
10970540 |
T |
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| Q |
250 |
aagtactatttcatctttttgtccctacctcc |
281 |
Q |
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| T |
10970539 |
aagtactatttcatctttttgtccctacctcc |
10970508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 30509772 - 30509924
Alignment:
| Q |
4 |
gtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattata |
103 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509772 |
gtagtagaagtgaagatgagtcaatttttctgagggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattata |
30509871 |
T |
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| Q |
104 |
tttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
156 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30509872 |
tttagagagaagagaaataatgaactacgtgaaataagagccattttgatgaa |
30509924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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