View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_44 (Length: 293)
Name: NF14323_low_44
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_44 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 48254801 - 48255070
Alignment:
| Q |
23 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
122 |
Q |
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| T |
48254801 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
48254900 |
T |
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| Q |
123 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
222 |
Q |
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| T |
48254901 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
48255000 |
T |
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| Q |
223 |
aaaatagtatgttaatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaatt |
293 |
Q |
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| T |
48255001 |
aaattagtatgttaatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaatt |
48255070 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 39282357 - 39282245
Alignment:
| Q |
28 |
aatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggtt |
127 |
Q |
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||||| |||||| || ||||| |||||||| || ||||| ||||||| |||| || | ||| |||| ||||| | |||| |||| |||||||||| ||| |
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| T |
39282357 |
aatagtcataaggtatccttaccttaatggtggcagcaatctgtgaaataactagaagcagatactcgtgcactctacctatgccgatgactgctacgtt |
39282258 |
T |
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| Q |
128 |
ggaagtgaaatca |
140 |
Q |
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| T |
39282257 |
ggaagtgaaatca |
39282245 |
T |
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