View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_46 (Length: 276)
Name: NF14323_low_46
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 40403208 - 40403453
Alignment:
| Q |
20 |
aaaccaacttgtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaa |
119 |
Q |
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| T |
40403208 |
aaaccaacttgtttggcctattttttacaaaatggaaccaacaaccataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaa |
40403307 |
T |
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| Q |
120 |
tttggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaaaggactgcacttgaaatatgggtacatggtataat |
219 |
Q |
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| T |
40403308 |
tttggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaaaggacggcacttgaaatatgggtacatagtataat |
40403407 |
T |
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| Q |
220 |
tacaattatatttttggctaatttgtgtgactcacacctatgctac |
265 |
Q |
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| T |
40403408 |
tacaattatatttttggctaatttgtgtgactcacacctatgctac |
40403453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 39619444 - 39619548
Alignment:
| Q |
67 |
taagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaaggactctgagaagctgaaagcatggagatcagctttgtt |
166 |
Q |
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| T |
39619444 |
taagacatcagaaaaatagttacgagaaagccatggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattgtc |
39619543 |
T |
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| Q |
167 |
tgaag |
171 |
Q |
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| T |
39619544 |
tgaag |
39619548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 40256826 - 40256675
Alignment:
| Q |
30 |
gtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaagg |
129 |
Q |
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|||||||| ||||||||||||||||| ||| || | |||| ||| ||| |||||||| | ||||| ||| |||||||||| | || |||||||| | |
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| T |
40256826 |
gtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaagaatagttatggtaaagcaatgactgaacatgaaaataattttggaaatg |
40256727 |
T |
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| Q |
130 |
actctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaactt |
181 |
Q |
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| T |
40256726 |
attatgagaagatacaaaaatggagatcagctttgtttcaagttgccaactt |
40256675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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