View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_54 (Length: 242)
Name: NF14323_low_54
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 1590363 - 1590514
Alignment:
| Q |
1 |
tcaagtcaaacacatcaacaccatcaatcatctatattttacttattcccctctctatgaacataaaccaaaaagaaatcaacaagctttatcactagag |
100 |
Q |
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| T |
1590363 |
tcaagtcaaacacatcaacaccatcaatcatctatattttacttattcccctctctatgaacataaaccaaaaagaaatcaacaagctttatcactagag |
1590462 |
T |
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| Q |
101 |
tttccacaaaactctagatatatatatgtatagaaaaacacaccagcgtcat |
152 |
Q |
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| T |
1590463 |
tttccacaaaactctagatatatatatgtatagaaaaacacaccagcgtcat |
1590514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 1590542 - 1590604
Alignment:
| Q |
180 |
gataaatgaaggagctagctacttagctagtagtagcatccaaaattagcatccaaaattacc |
242 |
Q |
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| T |
1590542 |
gataaatgaaggagctagctacttagctagtagtagcatccaaaattagcatccaaaattacc |
1590604 |
T |
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