View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14323_low_57 (Length: 236)
Name: NF14323_low_57
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27268378 - 27268612
Alignment:
| Q |
1 |
cagacaacaggcacgatactaacacgttcatatgctgaccaaagttgtatattgtattttgttatgtagtttttgtctggtggacaatctgaggttgaag |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268378 |
cagacaccaggcacgatactaacacgttcatatgctgaccaaagttgtatattgtattttgttatgtagtttttgtctggtggacaatctgaggttgaag |
27268477 |
T |
|
| Q |
101 |
caaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgt--------------agagctctccagaacaccgcattgaagacatgggg |
186 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268478 |
caacgctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgtcattctcatatgcaagagctctccagaacaccgcattgaagacatgggg |
27268577 |
T |
|
| Q |
187 |
aggccgcatagagaacgttcaggcagcacaagaag |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268578 |
aggccgcatagagaacgttcaggcagcacaagaag |
27268612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 21195861 - 21196029
Alignment:
| Q |
67 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgt--------------a |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21195861 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgtcgttctcatacgcaa |
21195960 |
T |
|
| Q |
153 |
gagctctccagaacaccgcattgaagacatggggaggccgcatagagaacgttcaggcagcacaagaag |
221 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
21195961 |
gagctctccaaaataccgcattgaagacatggggaggccgcgtagagaacgtgaaggcagctcaagaag |
21196029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 27251610 - 27251778
Alignment:
| Q |
67 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgt--------------a |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27251610 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgtcgttctcatacgcaa |
27251709 |
T |
|
| Q |
153 |
gagctctccagaacaccgcattgaagacatggggaggccgcatagagaacgttcaggcagcacaagaag |
221 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
27251710 |
gagctctccaaaataccgcattgaagacatggggaggccgcgtagagaacgtgaaggcagctcaagaag |
27251778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 49364097 - 49364014
Alignment:
| Q |
68 |
agtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcacgtgt |
151 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| || || | ||||| ||||||||| ||| ||||||||||| |||| |
|
|
| T |
49364097 |
agtttttgtcaggtggacaatcagaagttgaagcaactctaaatcttaatgctatgaaccaaagtcccaacccatggcatgtgt |
49364014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University