View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_6 (Length: 549)
Name: NF14323_low_6
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 20933585 - 20934097
Alignment:
| Q |
19 |
accctatcaatgctaccatcttaaaaccaaccttgtcctcaacgttggaacttaaaaagtgagtaagaatagagccatgcactcgggttggacatcaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20933585 |
accctatcaatgctaccatcttaaaaccaaccttgtcctcaacgttggaacttaaaaagtgagtaagaatagagccatacactcgggttggacatcaatt |
20933684 |
T |
|
| Q |
119 |
tcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaacctaatcttccctctgccatataccaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
20933685 |
tcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaaccaaatcttccctctgtcatataccaa |
20933784 |
T |
|
| Q |
219 |
attaagcaaaccatagatcgagatagaatttctccagcaaagtccatatgcagcaaccataacaaccatgtgtttctcattggctacatcaaacggtctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20933785 |
attaagcaaaccatagatcgagatagaatttctccagcaaagtccatatgcagcaaccataacaaccatgtgtttctcattggctacatcaaacggtctt |
20933884 |
T |
|
| Q |
319 |
tcaaaacaagcattggaaccacttacaataccttccatggagaaaatctctatttgaacatctaccaatgaagatactatctctatgtccttattatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20933885 |
tcaaaacaagcattggaaccacttacaataccttccatggagaaaatctctatttgaacatctaccaatgaagatactatctctatttccttattatttt |
20933984 |
T |
|
| Q |
419 |
ctttgatagcaagaactacaaactttttcgtctttattgggaggccattgacctttcttttctctttcttattgacccaaaagttcagtgttttccaccc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20933985 |
ctttgatagcaagaactacaaactttttcgtctttattgggaggccattgacctttcttttctctttcttattgacccaaaagttcagtgttttccaccc |
20934084 |
T |
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| Q |
519 |
cacataagcagta |
531 |
Q |
| |
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||||||||||||| |
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| T |
20934085 |
cacataagcagta |
20934097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 24157064 - 24156985
Alignment:
| Q |
107 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgctt |
186 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||| ||| |||||||||| |
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| T |
24157064 |
tggatatcaattgcacccaaatgcttaaggaccaaaactgccctctatcatatactaaattaagctgcatccaaatgctt |
24156985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 54361017 - 54360890
Alignment:
| Q |
105 |
gttggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaacctaatcttccct |
204 |
Q |
| |
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|||||||||||||| |||||| ||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54361017 |
gttggacatcaattgcacccatgtgcttta----caaaactttcctctgtcatataccaacataagcagcacccaaatgcttttgaaccaaatcttccct |
54360922 |
T |
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| Q |
205 |
ctgccatataccaaattaagcaaaccatagat |
236 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
54360921 |
ctgtcatataccaaattaagcaaaccatagat |
54360890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 24213429 - 24213350
Alignment:
| Q |
107 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgctt |
186 |
Q |
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|||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
24213429 |
tggatatcaattgcacccaaatgcttgacgaccaaaacttccctctatcatataccaaattaagccgcacccaaatgctt |
24213350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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